Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq75038 266 1e-66 seq12672 233 6e-57 seq75039 190 6e-44 seq25321 176 1e-39 >seq75038 Length=481 Score = 266 bits (294), Expect = 1e-66 Identities = 354/484 (73%), Gaps = 12/484 (2%) Strand=Plus/Plus Query 5339 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTA 5398 ||||| ||||| || || ||||| | ||| || | ||| || | ||| || |||||| || Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 5399 GCCAGGAAGAAATGTAAACTACG---GCTATTGTTAAAGCTAGCATACTGGAAGATGAGT 5455 || | ||||||||||||| || | ||||| |||| |||||| ||||| || | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTG--AAAGA-AGCATATTGGAAAATTAAA 117 Query 5456 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTA 5515 | ||||| || ||||| || || ||||||||||| |||||||| ||||| |||||| || Sbjct 118 CGACCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTA 177 Query 5516 TATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGA 5575 || ||| || || | |||||||||||||||| | || |||||||| | Sbjct 178 TAACCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAAT 237 Query 5576 CTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGG 5635 ||||||||||||| || || | ||||| || || ||||| ||||| | ||| || Sbjct 238 GAACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGA 297 Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || |||||||| | ||||| || ||||| ||||| || | |||||| || ||||| || Sbjct 298 AAAGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCT 357 Query 5696 GAGATACCAAGAGGCATACCATCACTGAAACT--TCCCTGTCCGAAAGGGTATACTAAAA 5753 || || || | |||||| |||| | |||| | ||| || || | ||||| | ||||| Sbjct 358 GAAATTCCTAAAGGCATTCCAT--CCGAAAATGATCCTTGACCAATTGGGTAAATTAAAA 415 Query 5754 ATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATT 5812 |||| | ||| || || ||||| || ||||||| ||||| |||||| || |||||| Sbjct 416 ATACCGCAGT-CGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATT 474 Query 5813 CCTA 5816 |||| Sbjct 475 CCTA 478 >seq12672 Length=424 Score = 233 bits (258), Expect = 6e-57 Identities = 309/424 (73%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 5339 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTA 5398 ||||| ||||| || || ||||| | ||| || | ||| || | ||| || |||||| || Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 5399 GCCAGGAAGAAATGTAAACTACG---GCTATTGTTAAAGCTAGCATACTGGAAGATGAGT 5455 || | ||||||||||||| || | ||||| |||| |||||| ||||| || | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTG--AAAGA-AGCATATTGGAAAATTAAA 308 Query 5456 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTA 5515 | ||||| || ||||| || || ||||||||||| |||||||| ||||| |||||| || Sbjct 307 CGACCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTA 248 Query 5516 TATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGA 5575 || ||| || || | |||||||||||||||| | || |||||||| | Sbjct 247 TAACCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAAT 188 Query 5576 CTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGG 5635 ||||||||||||| || || | ||||| || || ||||| ||||| | ||| || Sbjct 187 GAACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGA 128 Query 5636 AACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCA 5695 || |||||||| | ||||| || ||||| ||||| || | |||||| || ||||| || Sbjct 127 AAAGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCT 68 Query 5696 GAGATACCAAGAGGCATACCATCACTGAAACT--TCCCTGTCCGAAAGGGTATACTAAAA 5753 || || || | |||||| |||| | |||| | ||| || || | ||||| | ||||| Sbjct 67 GAAATTCCTAAAGGCATTCCAT--CCGAAAATGATCCTTGACCAATTGGGTAAATTAAAA 10 Query 5754 ATAC 5757 |||| Sbjct 9 ATAC 6 >seq75039 Length=421 Score = 190 bits (210), Expect = 6e-44 Identities = 275/383 (72%), Gaps = 4/383 (1%) Strand=Plus/Plus Query 5797 AATCCATGGTCGCATTCCTAATCTGTAACTAA-GTTCCCATTGGCGTCCCAAGTAAGCTG 5855 |||||| || |||||||||| | | ||| || ||||||||| ||||||| || || Sbjct 1 AATCCAAGGGCGCATTCCTAGAC-GAAACGAAAGTTCCCATTCACGTCCCATATA-GCAA 58 Query 5856 CGA-TACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCAT 5914 | | | || | | |||||| | || | | ||| || ||||| ||||| || |||||| Sbjct 59 CAAATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCAT 118 Query 5915 TCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTG 5974 ||||| | | || |||||||| || ||||| || ||||| ||||||||||| || | Sbjct 119 TCATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTA 178 Query 5975 GGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCA 6034 || | || || |||| || || ||||||||||| | || || || | || |||||| Sbjct 179 GGAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCA 238 Query 6035 CGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTT 6094 || || || || || || ||||| |||||||| || || || | |||||| ||| || Sbjct 239 CGAATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTA 298 Query 6095 GCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTG 6154 || ||||| | | || ||||| | || |||||||| || | ||| | ||||| | Sbjct 299 GCTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCT 358 Query 6155 GTGCTAGTAACCCAGTCACAGAA 6177 || ||||||| ||| ||||| || Sbjct 359 GTACTAGTAATCCATTCACAAAA 381 >seq25321 Length=478 Score = 176 bits (194), Expect = 1e-39 Identities = 251/351 (72%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 5828 AGTTCCCATTGGCGTCCCAAGTAAGCTGCGA-TACCAATAAGGAAGTGGAAGACGACGAG 5886 |||||||||| ||||||| || || | | | || | | |||||| | || | | Sbjct 478 AGTTCCCATTCACGTCCCATATA-GCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAA 420 Query 5887 TTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATA 5946 ||| || ||||| ||||| || ||||||||||| | | || |||||||| || ||||| Sbjct 419 TTGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATA 360 Query 5947 GAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCC 6006 || ||||| ||||||||||| || | || | || || |||| || || |||||||| Sbjct 359 AAAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCC 300 Query 6007 ATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGC 6066 ||| | || || || | || |||||||| || || || || || ||||| |||||||| Sbjct 299 ATATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGC 240 Query 6067 TACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACC 6126 || || || | |||||| ||| || || ||||| | | || ||||| | || || Sbjct 239 AACAAAAGCAATAATAAATACAGAGGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCC 180 Query 6127 AAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||||| || | ||| | ||||| | || ||||||| ||| ||||| || Sbjct 179 AAACCAACCAATATATAATCGGTTATCTGTACTAGTAATCCATTCACAAAA 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152190932602008