Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq75038 297 6e-76 seq12672 259 1e-64 seq75039 221 4e-53 seq25321 212 2e-50 seq251946 114 4e-21 >seq75038 Length=481 Score = 297 bits (328), Expect = 6e-76 Identities = 353/479 (74%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 25597 TTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCA 25656 ||||| ||||| || || | ||| | || || | ||| || | | || |||||| | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 25657 GCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 25716 || | ||||||||||||| || ||||| || |||||| ||||| || | | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776 ||||| || ||||| || || ||||||||||| || ||||||||||| |||||| |||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 25777 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 25836 ||| || |||||| |||||||||||||||| | ||| |||||||| | Sbjct 181 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 240 Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || |||||||||| ||||| | ||||| || || || || ||||| | |||||| || Sbjct 241 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 300 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 |||||||| | ||||| || ||||| || || |||| ||||||||||||||| |||||| Sbjct 301 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 360 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || | |||||| ||||| || || ||||| |||| ||||| | ||| ||||| Sbjct 361 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 420 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAG 26075 ||| || |||||||| || |||||||||||||| ||||| || | ||| ||||| Sbjct 421 GCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAG 479 >seq12672 Length=424 Score = 259 bits (286), Expect = 1e-64 Identities = 311/423 (74%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 25597 TTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCA 25656 ||||| ||||| || || | ||| | || || | ||| || | | || |||||| | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 25657 GCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTC 25716 || | ||||||||||||| || ||||| || |||||| ||||| || | | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 25717 CCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATAT 25776 ||||| || ||||| || || ||||||||||| || ||||||||||| |||||| |||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 25777 CCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTT 25836 ||| || |||||| |||||||||||||||| | ||| |||||||| | Sbjct 244 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 185 Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || |||||||||| ||||| | ||||| || || || || ||||| | |||||| || Sbjct 184 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 125 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 |||||||| | ||||| || ||||| || || |||| ||||||||||||||| |||||| Sbjct 124 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 65 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || | |||||| ||||| || || ||||| |||| ||||| | ||| ||||| Sbjct 64 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 5 Query 26017 GCA 26019 ||| Sbjct 4 GCA 2 >seq75039 Length=421 Score = 221 bits (244), Expect = 4e-53 Identities = 277/380 (73%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 26115 ||||| || | ||| ||||| | | | ||||||||||| ||||||| || | Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATATAGCAACAA 61 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 || || | || ||||||| | ||||| | |||||| |||||||| ||||| | ||| || Sbjct 62 ATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCA 121 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || | | ||||||||||| ||||| || || || | ||| |||||||| || | || Sbjct 122 TCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGA 181 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || ||||||| || || ||||||||||| | ||||| || || ||||| |||||| Sbjct 182 ATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGA 241 Query 26296 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 26355 || ||||| ||||| || ||||| ||||||||||| ||||| | |||| | | ||| Sbjct 242 ATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAGCT 301 Query 26356 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTA 26415 ||||| | | || ||||| || |||||||| || | ||| | ||||| | |||| Sbjct 302 GTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTGTA 361 Query 26416 CTTGTAACCCAGTCACATAA 26435 || |||| ||| ||||| || Sbjct 362 CTAGTAATCCATTCACAAAA 381 >seq25321 Length=478 Score = 212 bits (234), Expect = 2e-50 Identities = 257/350 (73%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 26086 AGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGT 26145 |||||||||| ||||||| || | || || | || ||||||| | ||||| | | Sbjct 478 AGTTCCCATTCACGTCCCATATAGCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAAT 419 Query 26146 TGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAG 26205 ||||| |||||||| ||||| | ||| || || | | ||||||||||| ||||| || Sbjct 418 TGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATAA 359 Query 26206 AAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCA 26265 || || | ||| |||||||| || | || | || ||||||| || || ||||||||| Sbjct 358 AAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCCA 299 Query 26266 TAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCA 26325 || | ||||| || || ||||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 298 TATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGCA 239 Query 26326 ACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCA 26385 ||||| ||||| | |||| | | |||||||| | | || ||||| || ||| Sbjct 238 ACAAAAGCAATAATAAATACAGAGGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCCA 179 Query 26386 AACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 ||||| || | ||| | ||||| | |||||| |||| ||| ||||| || Sbjct 178 AACCAACCAATATATAATCGGTTATCTGTACTAGTAATCCATTCACAAAA 129 >seq251946 Length=233 Score = 114 bits (126), Expect = 4e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 25983 ACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGA 26042 ||| ||||| |||| || || || | || || || ||||||||| ||||| || | Sbjct 1 ACTTCCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGT 60 Query 26043 ATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCC 26102 |||| ||| | ||||| || | ||| |||| | |||||| |||||||| | || || Sbjct 61 GAAAGCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACC 120 Query 26103 CAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTT 26162 | ||| ||| || | | ||| || | |||||| | || ||| || ||||| || Sbjct 121 AATATAACAACAGACCCCTAATAAAAAATGTAGCACAATCAATTCATAAGGGCCACCATT 180 Query 26163 ATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGAC 26215 ||| ||||| || || | | |||||||||||| ||||| || ||||||| || Sbjct 181 ATATAACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTGAATAC 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151536903690128