Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq142104 268 1e-66 seq139941 262 5e-65 seq55664 131 2e-25 >seq142104 Length=1514 Score = 268 bits (296), Expect = 1e-66 Identities = 630/944 (67%), Gaps = 18/944 (2%) Strand=Plus/Plus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 |||||||| ||| || | || ||||| | |||| | || |||| || || || Sbjct 306 TTAAAAATTTTCGTCAAGTGTGAATTTATTCTCCTGCTGTTTACTCATCACGCCTGCCTT 365 Query 36887 TTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 || ||||||||||||| |||| || ||||| |||||||| || || | || || || | Sbjct 366 CTGGTATTCTCCAACTC-TCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTCT 424 Query 36946 CCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACA--TGATAATTCCTTCAG 37003 |||| || |||||||| || | ||| || | | || ||| | | ||| Sbjct 425 CCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAAC--CAG 482 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 ||| || || ||||||||||| ||||| | ||| | | ||| || || || || Sbjct 483 AAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAG 542 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 || ||||||| || ||| ||| ||| || ||| || | |||||||||| | ||| Sbjct 543 CTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTAT 602 Query 37124 --ATTAACAATAACTTCTTCAGTTGGGGGATATTTT----AAATATTTAAACAATAAACA 37177 ||| || |||| ||| | ||| | | || || ||| |||| | ||| Sbjct 603 CGATTTT--ATGACTTTTTCTGATGG----TTTGTTGACCAAGTATGAGAACATCATACA 656 Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||| |||||||| | ||| || || | ||| || | ||||| || ||||||| || Sbjct 657 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 716 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297 |||||| || || ||||| | ||| || || || |||||||| ||||| ||||| || Sbjct 717 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 776 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 ||||| || || ||||| || || | | ||| ||| || || | || Sbjct 777 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTGAT 836 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| || | ||| | || ||| | ||||| ||||| ||||| || || || Sbjct 837 CCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAA 896 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 || | |||||| | || || ||||| ||||| | | ||| |||||||| Sbjct 897 AAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTC 956 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 |||||| ||||| || || ||||| || || ||||| ||||| || || || | | ||| Sbjct 957 AGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTG 1016 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || || | ||| | || | | ||||| ||||| || || ||||| ||||| || || Sbjct 1017 GACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAA 1076 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATT 37657 |||||||||||| | || || |||| |||||||||| || | ||| ||| |||| Sbjct 1077 GAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATC 1136 Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATA 37717 ||||||| || | ||| ||||| || | ||||| || || || ||| || Sbjct 1137 TTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTA 1196 Query 37718 CATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATC 37761 ||| ||||||||| |||| ||| || |||| | ||||||| Sbjct 1197 CATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 1240 >seq139941 Length=1515 Score = 262 bits (290), Expect = 5e-65 Identities = 629/944 (67%), Gaps = 18/944 (2%) Strand=Plus/Minus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 |||||||| ||| || | || ||||| | |||| | || |||| || || || Sbjct 1209 TTAAAAATTTTCGTCAAGTGTGAATTTATTCTCCTGCTGTTTACTCATCACGCCTGCCTT 1150 Query 36887 TTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTT 36945 || ||||||||||||| |||| || ||||| |||||||| || || | || || || | Sbjct 1149 CTGGTATTCTCCAACTC-TCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTCT 1091 Query 36946 CCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACA--TGATAATTCCTTCAG 37003 |||| || |||||||| || | ||| || | | || ||| | | ||| Sbjct 1090 CCATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTTGAGCAGTTGAGAGCAAC--CAG 1033 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 ||| || || ||||||||||| ||||| | ||| | | ||| || || || || Sbjct 1032 AAGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAG 973 Query 37064 TTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTAT 37123 || ||||||| || ||| ||| ||| || ||| || | |||||||||| | ||| Sbjct 972 CTTAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTAT 913 Query 37124 --ATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA----AACAATAAACA 37177 ||| || |||| ||| | ||| | | || | | || |||| | ||| Sbjct 912 CGATTTT--ATGACTTTTTCTGATGG----TTTGTTGACCAAGTACGAGAACATCATACA 859 Query 37178 TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCC 37237 ||||| |||||||| | ||| || || | ||| || | ||||| || ||||||| || Sbjct 858 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 799 Query 37238 TGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAAT 37297 |||||| || || ||||| | ||| || || || |||||||| ||||| ||||| || Sbjct 798 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 739 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 ||||| || || ||||| || || | | ||| ||| || || | || Sbjct 738 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGCTCTTTCTGGGTTGAT 679 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| || | ||| | || ||| | ||||| ||||| ||||| || || || Sbjct 678 CCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAA 619 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 || | |||||| | || || ||||| ||||| | | ||| |||||||| Sbjct 618 AAGTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTC 559 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 |||||| ||||| || || ||||| || || ||||| ||||| || || || | | ||| Sbjct 558 AGAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTG 499 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || || | ||| | || | | ||||| ||||| || || ||||| ||||| || || Sbjct 498 GACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAA 439 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATT 37657 |||||||||||| | || || |||| |||||||||| || | ||| ||| |||| Sbjct 438 GAAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATC 379 Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATA 37717 ||||||| || | ||| ||||| || | ||||| || || || ||| || Sbjct 378 TTTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTA 319 Query 37718 CATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATC 37761 ||| ||||||||| |||| ||| || |||| | ||||||| Sbjct 318 CATTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 275 >seq55664 Length=318 Score = 131 bits (144), Expect = 2e-25 Identities = 204/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 78233 TGTTATTGGAATTGATGAAGGTCAATTTTTTAATGATATAGTGGAATTTTCTGAAAATAT 78292 |||| | |||||||||||||| || |||||| ||| | ||||| ||||| ||| | || Sbjct 17 TGTTTTAGGAATTGATGAAGGCCAGTTTTTTCCAGATGTGGTGGAGTTTTCAGAAGAAAT 76 Query 78293 GGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTACATATCAAAGAAAAAC 78352 ||| | | ||||||| ||| || || | |||||||||| |||| |||| | | | Sbjct 77 GGCTAGTCTTGGAAAAACTGTAATAATTGCTGCATTAGATGGAACATTTCAACGGAGGGC 136 Query 78353 ATTTGGTAATATTCTAAATTTAATTCCATTATCTGAAAAGGTAATAAAATTAAATGCTAT 78412 ||||| | || | || | |||| ||| | |||| || | ||| | ||||| | Sbjct 137 TTTTGGCAGCATATTGGATCTTGTTCCTTTAGCAGAAAGCGTCGTCAAACTTAATGCAGT 196 Query 78413 ATGTAAAATATGTTTTAATGATGCTGCATTTACAAAAAGATTATGTGACGATACTAAAAT 78472 |||| || || || ||||||||||||||||||||||| |||| || | || | Sbjct 197 TTGTATGCATTGCTTCAAAGATGCTGCATTTACAAAAAGATTGGGTGAGGAGAAAAAGGT 256 Query 78473 TGAACTAATTGGTGGAGAGGATAAATATAGTTCTGTTTGTAGAAAATGTTAT 78524 ||| |||| || || | |||||||| | |||| || || | |||||| Sbjct 257 TGAGGTAATAGGGGGTGCTGATAAATACATGGCTGTCTGCCGAGACTGTTAT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590443390809120