Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq96271 158 1e-33 seq96269 158 1e-33 seq43933 141 8e-29 seq44199 102 7e-17 seq6934 102 7e-17 >seq96271 Length=453 Score = 158 bits (174), Expect = 1e-33 Identities = 186/249 (75%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 29810 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 249 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 191 Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 | ||||| | || || || || |||||||| || |||||||| || || || | || Sbjct 190 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 131 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 ||| ||| || || |||| | | || || || || || ||||| |||||||||||||| Sbjct 130 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 71 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || ||||||||||| || || || ||||||||||| ||||||||||| | | | || Sbjct 70 ACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGAC 11 Query 29991 GTAAAACTG 29999 |||||| || Sbjct 10 GTAAAATTG 2 >seq96269 Length=446 Score = 158 bits (174), Expect = 1e-33 Identities = 186/249 (75%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 29810 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 198 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 256 Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 | ||||| | || || || || |||||||| || |||||||| || || || | || Sbjct 257 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 316 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 ||| ||| || || |||| | | || || || || || ||||| |||||||||||||| Sbjct 317 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 376 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || ||||||||||| || || || ||||||||||| ||||||||||| | | | || Sbjct 377 ACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGAC 436 Query 29991 GTAAAACTG 29999 |||||| || Sbjct 437 GTAAAATTG 445 >seq43933 Length=829 Score = 141 bits (156), Expect = 8e-29 Identities = 196/273 (72%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30173 |||||||||||| ||| || | |||||| | ||||||| ||||| || || || Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAA 88 Query 30174 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30233 || | ||||||||| ||||| || || |||||||| || || || | || | ||||| Sbjct 89 GTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCC 148 Query 30234 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGA 30293 | |||||||| || || | || |||||||| ||||| ||| | || |||||||||| Sbjct 149 GCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCGGT 208 Query 30294 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30353 | | |||| ||| || ||| ||| ||||||||||| || |||| || | Sbjct 209 CAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCACG 268 Query 30354 CCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30385 ||| ||||| | ||||||||| || || ||||| Sbjct 269 CCAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 >seq44199 Length=311 Score = 102 bits (112), Expect = 7e-17 Identities = 211/312 (68%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 29914 GCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAG 29973 |||||||| ||||| || || | ||||| || | ||| | |||||| | | | || || Sbjct 311 GCGATGTTGAAGGGCACGCCCAAGCCCATATCACACGAGCGCTGGTACATCAGGCAGGAC 252 Query 29974 AGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 || || |||| | || || ||||| || | |||| ||||| || | ||||||||| Sbjct 251 AGTTCACCGTTGGCAACATAGAACTGGCAGAACATGTGACACGGGGGCAACGCCATGAGG 192 Query 30034 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT- 30092 ||| || || |||||||| ||| | ||| || | || |||| | ||||| Sbjct 191 TGCAAATCCGCAGGATTCCAGGCTGACAGAAGGATACGACGATCAG-TGGGATCTTCCTT 133 Query 30093 GAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 ||| || | | |||| |||||||||||| ||| || | |||||| | Sbjct 132 GATCTTCCGGATGCACTCGGC------CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGT 79 Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206 ||||||| ||||| || || || || | ||||||||| ||||| || || ||||| Sbjct 78 GTGCATGTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAG 19 Query 30207 GTCTCCCTCTTC 30218 ||| || || || Sbjct 18 GTCGCCTTCCTC 7 >seq6934 Length=470 Score = 102 bits (112), Expect = 7e-17 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 30166 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30225 ||||| ||||| | |||||| || || || || || || || |||||||| || ||||| Sbjct 98 GCTCCAAAATGACGCCACTGAAATCCATAAACTGGGCCAAGATCTCCCTCCTCTCTGTGA 157 Query 30226 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30285 | || || ||||| | ||| |||| ||||| || || ||||||| | | ||| Sbjct 158 TGCAAACCTTGCTTGTTAAGAAAATCTCGTGAACCATTAGCATCCCAGAAATGAATTCCC 217 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30345 || || | || ||| | || || | || || || ||||||||||||||||| | Sbjct 218 TTATCACTCAACTGTTTTGCATTAGTACAACCACTCACAAACCACAGCAGCTCCTCGGCC 277 Query 30346 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA-CTGT 30390 || | |||||| || | ||| || |||||||| ||||| |||| Sbjct 278 ACTCCGCGCCAAAACACACGCTTTGTTGTGAGGAGAGGAAAGCTGT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407357513728244