Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq174639 334 8e-87 seq75038 280 2e-70 seq12672 266 4e-66 seq174641 174 2e-38 seq75039 165 9e-36 seq25321 154 2e-32 seq174642 138 1e-27 seq174640 134 2e-26 seq251946 120 3e-22 >seq174639 Length=919 Score = 334 bits (370), Expect = 8e-87 Identities = 525/745 (70%), Gaps = 11/745 (1%) Strand=Plus/Plus Query 162582 AGCAACT--TGCTTC-ATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTAT 162638 ||||||| ||||| |||| || || ||| |||||| |||| ||||| ||||| || Sbjct 158 AGCAACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAAT 217 Query 162639 CAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGT 162698 |||||||| || || || |||||||| ||||| || ||||| || | || ||||| | Sbjct 218 AAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAAT 277 Query 162699 TCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGA 162758 || ||||| ||||||||||| |||| |||||||| | ||||| || |||| Sbjct 278 ACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGA 337 Query 162759 TGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAAT 162818 |||||| || ||||||||||| | | ||| ||||||| | || || | | || | Sbjct 338 TGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGT 397 Query 162819 CACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTG 162875 || | || ||| | | |||||| | || | | ||||||||| | || || Sbjct 398 T---GCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATG 454 Query 162876 GATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCC 162935 ||| | ||| || | ||| ||||| || ||||| || || || || | || ||||| Sbjct 455 GATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCC 514 Query 162936 TTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTA 162995 | ||||||| | || || || | ||||||| | || || ||| |||||||| | Sbjct 515 AATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTT 574 Query 162996 CATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGT 163055 ||| | |||||||||||||| || ||||| ||||||| || |||||||| | ||||| Sbjct 575 TATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGT 634 Query 163056 CGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTC 163115 || |||||||| || |||||| | |||||||| ||||| ||||| | ||||| ||||| Sbjct 635 AGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTC 694 Query 163116 TCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACT-ACGGTTATAAGTTCGGACAAG 163174 ||| | ||||||| | | | | | | | || | || |||||||| || |||| Sbjct 695 ACTTCTTGCAGAAACTGCAG-GAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAG 753 Query 163175 AAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGT 163234 |||| || ||||| | ||| || || ||||| || |||||| | | || || || | Sbjct 754 AAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAAT 813 Query 163235 ATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCT 163294 |||| || ||||| ||||| ||| |||||||||||||| || || | || || | Sbjct 814 ATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTG 873 Query 163295 GCATCTGGTTCACTGCAATGGGTGT 163319 | || |||||||| ||| | || || Sbjct 874 GGATTTGGTTCACAGCACTTGGAGT 898 >seq75038 Length=481 Score = 280 bits (310), Expect = 2e-70 Identities = 351/479 (73%), Gaps = 2/479 (0%) Strand=Plus/Minus Query 162860 TAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTG 162919 |||| ||||| |||||||| ||| || || || | ||||| | || || || | Sbjct 478 TAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCGG 419 Query 162920 TGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTT 162979 | || || | || || | |||||||| || || || || | ||||||| | || |||| Sbjct 418 TATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTT 359 Query 162980 CTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCT 163039 | || ||||| || | ||| | || |||||||||||||| || || ||||||| || | Sbjct 358 CAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTT 299 Query 163040 TCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTT 163099 | |||||| | || || || ||||| || ||||||||| | ||| ||||||||| |||| Sbjct 298 TTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTT 239 Query 163100 CTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC-GGT 163158 | | |||||||| || | || | ||||| ||||| | || ||| | || | | ||| Sbjct 238 CATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCA-ACAAATGCTGGT 180 Query 163159 TATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGT 163218 |||| ||||||||||||||||| || || |||||||| || || ||||| || |||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 163219 CGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCT 163278 || || || ||||| ||||| |||||||| |||||||| || | || |||||| | ||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 163279 GCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAA 163337 | ||||| || | || ||||||||| | | || | ||||| |||||||| || Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 266 bits (294), Expect = 4e-66 Identities = 300/399 (75%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 |||||||| || || || || | ||||||| | || ||||| || ||||| || | ||| Sbjct 27 GGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTCAATTTTATG 86 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA 163059 | || |||||||||||||| || || ||||||| || || |||||| | || || || Sbjct 87 ATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTAGGTGTAGCT 146 Query 163060 GGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTT 163119 ||||| || ||||||||| | ||| ||||||||| ||||| | |||||||| || | Sbjct 147 GGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACTTCATCATTA 206 Query 163120 ATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC-GGTTATAAGTTCGGACAAGAAGA 163178 || | ||||| ||||| | || ||| | || | | ||||||| |||||||||||||| Sbjct 207 ATTCGTGAAACAACTGAAAATGAATCA-ACAAATGCTGGTTATAGATTCGGACAAGAAGA 265 Query 163179 AGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 ||| || || |||||||| || || ||||| || |||||||| || || ||||| ||||| Sbjct 266 AGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTCCAATATGC 325 Query 163239 ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCAT 163298 |||||||| |||||||| || | || |||||| | ||| | ||||| || | || Sbjct 326 TTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTAGTTGGAAT 385 Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAA 163337 ||||||||| | | || | ||||| |||||||| || Sbjct 386 TTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 424 >seq174641 Length=312 Score = 174 bits (192), Expect = 2e-38 Identities = 213/291 (73%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 |||||| | || | | ||||||||| | || ||||| | ||| || | ||| ||||| Sbjct 301 TGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCT 242 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || ||||| || || || || | || ||||| | ||||||| | || || || Sbjct 241 GTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGAT 182 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | ||||||| | || || ||| |||||||| | ||| | |||||||||||||| || Sbjct 181 GGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACAT 122 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 ||||| ||||||| || |||||||| | ||||| || |||||||| || |||||| | Sbjct 121 AACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTA 62 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 |||||||| ||||| ||||| | ||||| ||||| ||| | ||||||| Sbjct 61 TTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACT 11 >seq75039 Length=421 Score = 165 bits (182), Expect = 9e-36 Identities = 213/289 (74%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 162592 TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTT 162651 || || ||||| || |||| ||||||||||| ||||| ||||| || | ||||||||| Sbjct 288 TTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGAACCTGTT 229 Query 162652 GCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAAT 162711 | |||||| | | ||||| ||||| || || | || ||| | |||||| |||||| Sbjct 228 TCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAAC 169 Query 162712 GCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAT 162771 || |||||| | || || ||||| || |||||||| || || | ||||| ||| | ||| Sbjct 168 GCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATAT 109 Query 162772 AATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAA-TCACAGC-ATACT 162829 ||||||||||||| ||| | | || | |||||| | | |||| | || ||| | Sbjct 108 AATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGCTATA-T 50 Query 162830 GTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 | || ||| | ||||||||||| | || |||| ||||| |||||||| Sbjct 49 G-GGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 162592 TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTT 162651 || || ||||| || |||| ||||||||||||||||| ||||| || | ||||||||| Sbjct 222 TTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTGAACCTGTT 281 Query 162652 GCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAAT 162711 | |||||| | | ||||| ||||| || || | || ||| | |||||| |||||| Sbjct 282 TCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAAC 341 Query 162712 GCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAT 162771 || |||||| | || || ||||| || |||||||| || || | ||||| ||| | ||| Sbjct 342 GCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATAT 401 Query 162772 AATGGTGGACCTTTCCAACTTGTAGTCTTCCACTT 162806 ||||||||||||| ||| | | || | |||||| Sbjct 402 AATGGTGGACCTTATCAATTAATTGTTTGCCACTT 436 >seq174642 Length=303 Score = 138 bits (152), Expect = 1e-27 Identities = 167/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 162582 AGCAACT--TGCTTC-ATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTAT 162638 ||||||| ||||| |||| || || ||| |||||| |||| ||||| ||||| || Sbjct 251 AGCAACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAAT 192 Query 162639 CAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGT 162698 |||||||| || || || |||||||| ||||| || ||||| || | || ||||| | Sbjct 191 AAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAAT 132 Query 162699 TCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGA 162758 || ||||| ||||||||||| |||| |||||||| | ||||| || |||| Sbjct 131 ACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGA 72 Query 162759 TGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGT-CTTC 162801 |||||| || ||||||||||| | | ||| ||||||| |||| Sbjct 71 TGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTC 28 >seq174640 Length=289 Score = 134 bits (148), Expect = 2e-26 Identities = 182/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 || |||||||| || |||||||| || ||||| | ||| || || ||||| || ||| Sbjct 255 GGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTT 196 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 ||| | | || || || ||||| || ||||| ||||| ||| |||||||||||||| Sbjct 195 GGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTA 136 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || | | || |||||||| ||| | || || || ||||| ||| Sbjct 135 GCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTTC 76 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGTGGTAAAGTGATTCCT 163395 ||| | || ||||| ||||||||||||||| || | || | |||| | | || Sbjct 75 AACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGATTCCAGTGGCCATCTAATCTTA 16 Query 163396 ACTTGGGCAGATAT 163409 | |||||||||||| Sbjct 15 AGTTGGGCAGATAT 2 >seq251946 Length=233 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || ||||||| ||||| || |||||||| ||| || | ||||| ||||| |||||||||| Sbjct 233 GTATTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTG 174 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTC 162838 | |||| || | | || | || || | | || || || ||||||| Sbjct 173 GCCCTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTG 114 Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 |||||||||| ||| || |||||||||||||| ||||||| |||||| | | | |||| Sbjct 113 AGTGGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCAC 54 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGG 162947 | ||| | |||||| || || || | || ||||| | |||||||| Sbjct 53 CTGTAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551335475740320