Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq174639 304 1e-77 seq75038 260 2e-64 seq12672 233 2e-56 seq75039 206 3e-48 seq25321 179 4e-40 seq174640 172 6e-38 seq25705 172 6e-38 seq174641 159 4e-34 seq251946 138 1e-27 seq23841 107 2e-18 >seq174639 Length=919 Score = 304 bits (336), Expect = 1e-77 Identities = 506/719 (70%), Gaps = 18/719 (3%) Strand=Plus/Plus Query 163015 GTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATC 163074 || || ||||| || || | || || || ||||| ||||| | |||||||| ||||| Sbjct 201 GTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATT 260 Query 163075 ATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGG 163134 || | || || || | ||| ||| || || ||||| |||| |||||||| | ||| Sbjct 261 ATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGG 320 Query 163135 GAAGCCGCATC-ACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTT 163193 || | | || | |||||||||| | ||||| |||||| | | ||| | ||||| | Sbjct 321 GA-GTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACT 379 Query 163194 TCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAATGGGAACTTTCA-TATC 163249 ||| || | | || | ||| | | ||||| | ||||||||| |||| | || Sbjct 380 TCATTTTATGCTTGGTGT---TGCTTGTTGGATGGGTAGAGAATGGGAA--TTCAGTTTC 434 Query 163250 -GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCC 163308 | ||||||||| | || ||||| | |||||| | ||| |||||||||| |||||| | Sbjct 435 AGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTT 494 Query 163309 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGC 163368 ||||| || | || ||||| | ||||||| | || || || | |||||| | || Sbjct 495 GCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGA 554 Query 163369 ATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCAC 163428 || ||| || || || | |||||||| ||||||||||| || ||||| | ||||| Sbjct 555 ATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCAT 614 Query 163429 CCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCAT 163488 || |||||||| | ||||| |||||||| || || || ||| | || ||||||||| Sbjct 615 CCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCAT 674 Query 163489 GGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGA-GTCA--CAAAAC 163545 || | ||||| |||||||| || ||| |||| | || | | | ||| Sbjct 675 GGTTCATTAGTTACATCTTCACT--TCTTGCAGA-AACTGCAGGAGATATTAGCCTAAAT 731 Query 163546 TATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTAC 163605 ||| || ||||||||||||||||| || || || | ||| ||||| ||||| || Sbjct 732 GTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTAT 791 Query 163606 TTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTC 163665 || ||| | | || || |||||||| || ||||| ||| | ||||||||||||||| Sbjct 792 TTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTC 851 Query 163666 CTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGC 163724 || ||||| ||||| || | || || ||||| || ||||| || ||||| || ||||| Sbjct 852 CTAGCAGCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGAGTAAGTACAATGGC 910 >seq75038 Length=481 Score = 260 bits (288), Expect = 2e-64 Identities = 327/449 (73%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 163253 TAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAG 163312 |||| |||||||| ||||| |||||| || || | || |||||||| || | || | Sbjct 478 TAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCGG 419 Query 163313 TCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCT 163372 | || | | || || | |||||||| || || || || | |||||| | || || | Sbjct 418 TATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTT 359 Query 163373 CTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCT 163432 | || || ||||| | ||| |||| |||||||||||||| || || | ||||| || | Sbjct 358 CAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTT 299 Query 163433 TCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCA 163492 | |||||||| || || |||||||| || ||||| ||| | || || || |||||||| Sbjct 298 TTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTT 239 Query 163493 GTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTT 163552 | ||||| || ||| | | ||||| || ||||||| ||| ||| ||| ||||| Sbjct 238 CATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTT 179 Query 163553 ACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTC 163612 | | || || ||||||||||| ||||| ||||| || ||||||||||| || || |||| Sbjct 178 ATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTC 119 Query 163613 GTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAG 163672 |||| || ||||||||||| || ||||| ||| | | | || |||||| | || Sbjct 118 GTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTA 59 Query 163673 CATGGCCTGTCGTCGGAATCTGGTTTACT 163701 |||||||| || ||||| ||||| ||| Sbjct 58 TTTGGCCTGTAGTTGGAATTTGGTTCACT 30 >seq12672 Length=424 Score = 233 bits (258), Expect = 2e-56 Identities = 273/369 (74%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392 |||||||| || || || || | |||||| | || || || || || ||||| | ||| Sbjct 27 GGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTCAATTTTATG 86 Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT 163452 |||| |||||||||||||| || || | ||||| || || |||||||| || || ||| Sbjct 87 ATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTAGGTGTAGCT 146 Query 163453 GGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTC 163512 ||||| || ||||| ||| | || || || |||||||| | ||||| || ||| | Sbjct 147 GGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACTTCATCATTA 206 Query 163513 GTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAA 163572 | ||||| || ||||||| ||| ||| ||| |||||| | || || ||||||||| Sbjct 207 ATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCGGACAAGAAGAA 266 Query 163573 GAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCA 163632 || ||||| ||||| || ||||||||||| || || |||||||| || ||||||||||| Sbjct 267 GAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTCCAATATGCT 326 Query 163633 TCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATC 163692 || ||||| ||| | | | || |||||| | || |||||||| || ||||| Sbjct 327 TCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTAGTTGGAATT 386 Query 163693 TGGTTTACT 163701 ||||| ||| Sbjct 387 TGGTTCACT 395 >seq75039 Length=421 Score = 206 bits (228), Expect = 3e-48 Identities = 276/381 (72%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 || || || ||| | ||| ||| ||||||| | ||| | |||||||| || || Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 |||||||||||| | || |||| || ||||| || || | || || || ||||| || Sbjct 321 ATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || ||||| || || |||||||| | | ||||| ||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 203 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || || | || || || |||| |||| |||||||||||| | || || ||||| || Sbjct 202 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 143 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| || || | ||||| ||||| ||||| ||||| |||| ||| | | || Sbjct 142 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 83 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | ||||| | | || || | | |||||||||||||||||||||||||| | ||| Sbjct 82 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTTCG 23 Query 163251 CTTAGGTATGCGCCCCTGGAT 163271 |||| |||||||| ||||| Sbjct 22 TCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 179 bits (198), Expect = 4e-40 Identities = 252/351 (72%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 || || || ||| | ||| ||| ||||||| | ||| | |||||||| || || Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 |||||||||||| | || |||| || ||||| || || | || || || ||||| || Sbjct 189 ATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACC 247 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || ||||| || || |||||||| | | ||||| ||||| Sbjct 248 TCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 307 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || || | || || || |||| |||| |||||||||||| | || || ||||| || Sbjct 308 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 367 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| || || | ||||| ||||| ||||| ||||| |||| ||| | | || Sbjct 368 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 427 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACT 163241 | ||||| | | || || | | ||||||||||||||||||||||| Sbjct 428 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq174640 Length=289 Score = 172 bits (190), Expect = 6e-38 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 163548 TGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTT 163607 ||| || ||||||||||||||||| || || || | ||| ||||| ||||| || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 163608 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCT 163667 ||| | | || || |||||||| || ||||| ||| | ||||||||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 163668 GGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATT 163727 ||||| ||||| || | || || ||||| || ||||| || ||||| || ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 163728 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 163767 |||| | || ||||| ||||||||||| |||||||| ||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq25705 Length=358 Score = 172 bits (190), Expect = 6e-38 Identities = 200/267 (75%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 164943 CTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTC 165002 || || |||||||| | ||||| || || || | ||||| ||||| |||| ||| Sbjct 302 CTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTC 243 Query 165003 TCTGGTCCTATTGCTGTTTTTGTCAGC-GTCTTCCTTATCTACCCACTGGGTCAGTCCAG 165061 || || || || || |||| | || | |||||||| || || ||||| ||||| || || Sbjct 242 TCAGGACCAATAGCAGTTTATA-CATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAG 184 Query 165062 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCA 165121 ||||| || || || ||||||||| || || ||||| ||||||| || |||||||| Sbjct 183 CTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCA 124 Query 165122 AGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGG 165181 ||| || || || ||||| | || || || || ||||||||||| || || || ||||| Sbjct 123 AGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGG 64 Query 165182 AGGAGCATTGCTATCTGCTATTCATGG 165208 ||| ||||| ||||| ||||| ||||| Sbjct 63 AGGTGCATTACTATCAGCTATCCATGG 37 >seq174641 Length=312 Score = 159 bits (176), Expect = 4e-34 Identities = 212/291 (73%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 163223 TGGGACGTGAATGGGAACTTTCA-TATC-GCTTAGGTATGCGCCCCTGGATCTGTGTAGC 163280 |||| | ||||||||| |||| | || | ||||||||| | || ||||| | |||||| Sbjct 312 TGGGTAGAGAATGGGAA--TTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGC 255 Query 163281 ATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGG 163340 | ||| |||||||||| |||||| | ||||| || | || ||||| | ||||||| Sbjct 254 TTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGC 195 Query 163341 TTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTT 163400 | || || || | |||||| | || || ||| || || || | |||||||| || Sbjct 194 TAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTT 135 Query 163401 CCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTT 163460 ||||||||| || ||||| | ||||| || |||||||| | ||||| |||||||| || Sbjct 134 CCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATT 75 Query 163461 CGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACT 163511 || || ||| | || ||||||||||| | ||||| |||||||| Sbjct 74 TGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq251946 Length=233 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 163112 GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTG 163171 || ||||||| ||||| || |||||||| ||||| | ||||| ||| | ||||| |||| Sbjct 233 GTATTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTG 174 Query 163172 GTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTG 163231 | |||| || | | || | || || | | || ||| | ||||| || |||| Sbjct 173 GCCCTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTG 114 Query 163232 AATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCAC 163291 | |||||||| ||||| ||||||||||| || ||||||| ||| || | | | |||| Sbjct 113 AGTGGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCAC 54 Query 163292 CTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGG 163340 |||| ||||||||| | ||||| || || || ||||| | |||||||| Sbjct 53 CTGTAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 >seq23841 Length=230 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 165284 AGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGC 165343 |||||| |||||||| ||||| || || || || || ||||| ||| | || || | || Sbjct 33 AGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGGTGTAGC 92 Query 165344 GTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTG 165403 || || |||||| | ||||||||||| |||||| | ||||| ||| | ||| | || Sbjct 93 CTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGGTATGTG 152 Query 165404 GACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 |||||| || ||||| || ||||| | || | || || | ||||| ||||| Sbjct 153 GACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561428252516640