Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq139941 221 2e-52 seq142104 217 3e-51 seq45252 136 7e-27 seq47423 123 5e-23 seq242622 95.1 2e-14 >seq139941 Length=1515 Score = 221 bits (244), Expect = 2e-52 Identities = 572/868 (66%), Gaps = 37/868 (4%) Strand=Plus/Plus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530 |||||||| ||| | |||||||| |||||| || ||| |||||| ||||| || | Sbjct 301 AAAGATATTTGGCAAATGTACAAAAAGGCTGAAGCCTCCTTCTGGACAGCCGAGGAAGTC 360 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTT 25587 ||||| |||| || | || | |||| ||| || || | || || | |||| Sbjct 361 GATCTTTCCAAAGATAAAGATGACTGG---GCTAAACTTTCGGATGATGAAAGGTATTTC 417 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||||| |||| | || ||||| || || ||||| || ||||| ||||| || Sbjct 418 ATCAAGCACGTTCTTGCTTTCTTCGCTGCTAGCGATGGCATTGTGAATGAGAACTTGGTT 477 Query 25648 GAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 ||| | || | | |||||| || || | | |||| | |||||||| || ||||| || Sbjct 478 GAGTGTTTTAGCCAGGAAGTCCAAGTTCCAG-AGGCGAGATGTTTCTATGGCTTCCAAAT 536 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 || || || ||| | |||||||| |||| || || |||| || |||||| Sbjct 537 AGCAATAGAGAATATCCACTCTGAAATGTA---CAGTCTGTTGATTGAAACTTACATTGA 593 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG 25823 ||| || || | | | | || || |||||| ||| || || | ||| | | Sbjct 594 GGACTCGGCTGAAAAACAGCAACTTTTCAATGCCATTGAGACAATGCCTTGTGTCATGCG 653 Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA--GCGCTACGTTTGGCGAGCGG 25881 || || | ||||||| |||| ||||||||| ||||| | || | | ||| ||| || Sbjct 654 AAAAGCCCAGTGGGCCCTGAATTGGATCAAC--CCAGAAAGAGCATCTTATGGTGAGAGG 711 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | || ||||||||||||||||| || ||||| ||| ||||| ||||| ||||| ||| Sbjct 712 ATAGTTGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTC 771 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||| || ||| ||| | ||||| || || ||| || || ||||||||||| | Sbjct 772 TGGCTAAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGT 831 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 ||||||||||| || | || |||||||| || | | | || ||||| || ||||| Sbjct 832 GACGAGGGTCTTCATTGTGACTTTGCCTGTATGATGTTCTCG---TACTTGGTCAACAAA 888 Query 26062 CCTTCTCAAGAGACCGTC-TACAGT--ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 || || ||| | ||| || | | || ||| |||| ||||| | || || | || Sbjct 889 CCATC---AGAAAAAGTCATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAA 945 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 || | | ||||||||| ||| | |||| || Sbjct 946 TTCCTTACAGAAGCCCTTCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAACAG 1005 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCTG--TGC---CAGCTGGGACTCGCCAGACTCT 26233 |||||||| | ||| || ||| || ||| ||| || ||| | | | | | Sbjct 1006 TACATTGAATTTGTTGCTGACAGACTTCTGGTTGCTCTCAACTG-----CTCAAAGGTTT 1060 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| | | ||||| || ||||| ||||| ||||| || ||||| || ||||| |||| Sbjct 1061 ACAATGCTAAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACT 1120 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | ||||| ||||| || || || || || Sbjct 1121 TTTTTGAGAAGAGAGTTGGAGAATACCA 1148 >seq142104 Length=1514 Score = 217 bits (240), Expect = 3e-51 Identities = 571/868 (66%), Gaps = 37/868 (4%) Strand=Plus/Minus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530 |||||||| ||| | |||||||| |||||| || ||| |||||| ||||| || | Sbjct 1214 AAAGATATTTGGCAAATGTACAAAAAGGCTGAAGCCTCCTTCTGGACAGCCGAGGAAGTC 1155 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCT---CTATCCAAAGACGAGCAGCATTTT 25587 ||||| |||| || | || | |||| ||| || || | || || | |||| Sbjct 1154 GATCTTTCCAAAGATAAAGATGACTGG---GCTAAACTTTCGGATGATGAAAGGTATTTC 1098 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||||| |||| | || ||||| || || ||||| || ||||| ||||| || Sbjct 1097 ATCAAGCACGTTCTTGCTTTCTTCGCTGCTAGCGATGGCATTGTGAATGAGAACTTGGTT 1038 Query 25648 GAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 ||| | || | | |||||| || || | | |||| | |||||||| || ||||| || Sbjct 1037 GAGTGTTTTAGCCAGGAAGTCCAAGTTCCAG-AGGCGAGATGTTTCTATGGCTTCCAAAT 979 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 || || || ||| | |||||||| |||| || || |||| || |||||| Sbjct 978 AGCAATAGAGAATATCCACTCTGAAATGTA---CAGTCTGTTGATTGAAACTTACATTGA 922 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG 25823 ||| || || | | | | || || |||||| ||| || || | ||| | | Sbjct 921 GGACTCGGCTGAAAAACAGCAACTTTTCAATGCCATTGAGACAATGCCTTGTGTCATGCG 862 Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGA--GCGCTACGTTTGGCGAGCGG 25881 || || | ||||||| |||| ||||||||| ||||| | || | | ||| ||| || Sbjct 861 AAAAGCTCAGTGGGCCCTGAATTGGATCAAC--CCAGAAAGAGCATCTTATGGTGAGAGG 804 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | || ||||||||||||||||| || ||||| ||| ||||| ||||| ||||| ||| Sbjct 803 ATAGTTGCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCTGCCATTTTC 744 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 ||||| || ||| ||| | ||||| || || ||| || || ||||||||||| | Sbjct 743 TGGCTAAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGT 684 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA 26061 ||||||||||| || | || |||||||| || | | | | ||||| || ||||| Sbjct 683 GACGAGGGTCTTCATTGTGACTTTGCCTGTATGATGTTCTC---ATACTTGGTCAACAAA 627 Query 26062 CCTTCTCAAGAGACCGTC-TACAGT--ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAG 26118 || || ||| | ||| || | | || ||| |||| ||||| | || || | || Sbjct 626 CCATC---AGAAAAAGTCATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAA 570 Query 26119 TTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAA 26178 || | | ||||||||| ||| | |||| || Sbjct 569 TTCCTTACAGAAGCCCTTCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAACAG 510 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCTG--TGC---CAGCTGGGACTCGCCAGACTCT 26233 |||||||| | ||| || ||| || ||| ||| || ||| | | | | | Sbjct 509 TACATTGAATTTGTTGCTGACAGACTTCTGGTTGCTCTCAACTG-----CTCAAAGGTTT 455 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| | | ||||| || ||||| ||||| ||||| || ||||| || ||||| |||| Sbjct 454 ACAATGCTAAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACT 395 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | ||||| ||||| || || || || || Sbjct 394 TTTTTGAGAAGAGAGTTGGAGAATACCA 367 >seq45252 Length=640 Score = 136 bits (150), Expect = 7e-27 Identities = 343/513 (67%), Gaps = 35/513 (7%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| || || || ||||||||||| | | ||| || | |||||||| || || || Sbjct 518 GCCAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGTATTCGATGATCTCCGTGCACAGA 459 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| ||| | |||||| |||| || | ||||| ||||||||||||||| |||||| Sbjct 458 TTGGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGGACTTGCGATTGGCATGATCCTTG 399 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | ||| ||| ||||||| ||| ||| ||| ||| ||| | | Sbjct 398 TACAGCATGTAAGGAGTGCCCGTCTCCATCTGCGCCTCCACAATGCGCGACCACAAATG- 340 Query 221894 CTG-GCGCTCACCGTCCTC------TTGACTGCACCCTC--------GGT-----CTTTT 221933 ||| || |||||||| || || ||||| | || ||| | || Sbjct 339 CTGAGCCTTCACCGTCTTCCGACCTTTCCCTGCAGCTTCCAAGCTCAGGTAGAGCCGATT 280 Query 221934 CA--TACCCGGTATAGAGCATG--TCAAACTTTTCACCGTACGCCTCGTCCAGGCCT-GG 221988 | | | || | |||| || |||| | ||| | || |||||| | | | || Sbjct 279 GAAGTCCTCGCCAAAGAG-ATCCATCAAGCCCTTCCCGGT----CTCGTC--GTCGTAGG 227 Query 221989 ACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAG 222048 || | | | || || | ||| |||||| | || | ||||| | | ||||||||| Sbjct 226 ACTCGTTGGGG--CAAAACAGGGTCCAGTCCGCGTCCGCCTTGACACGTTCCATGAAGAG 169 Query 222049 GTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT 222108 ||||| | ||| || | | |||||||| |||| |||||||||||| ||| | ||| Sbjct 168 ATCCGGCACCCAAAGGCCATAGAAGAGATCCCTGGCACGCTGCTCCTCCTTGCCATGGTT 109 Query 222109 TTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAG 222168 ||| | || ||||| ||||| |||| || || ||||| || ||||| ||||| |||| Sbjct 108 TTTACGAAGCTCCAAGAACTCGAAAACATCGGCATGCCATGGTTCCAGGTAGACTGCCAA 49 Query 222169 AGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||| || ||||| ||||| |||||||| Sbjct 48 AGCTCCCTTGCGCTTACCTCCACCTTGATCCAC 16 >seq47423 Length=281 Score = 123 bits (136), Expect = 5e-23 Identities = 186/259 (72%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT--CAACAGCCAGAGCGCTACGTTTGG 25874 |||||| |||||| |||||| || ||||||| | || || | || | ||||| Sbjct 269 TCAAGAAGAAGGCAGACTGGGCCTTGCAGTGGATTTCTTCA--CAAACGGCCTCCTTTGG 212 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 || | | | |||||||| || || ||||||||||| || ||||| ||||| | Sbjct 211 AGAAAGAGTTATTGCCTTTGCCGCAGTTGAGGGCATCTTCTTTTCGGGTTCATTTGCATC 152 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 || |||||||||||| | ||| || | |||||| ||||| ||| ||||| ||| | | Sbjct 151 TATTTTCTGGCTCAAGAA-AAGAGGTCTCATGCCAGGGCTCACCTTCTCCAATGAGTTGA 93 Query 25994 TCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGC 26053 |||||||||||||||| || ||| | || ||||| ||||| | |||| | | ||| Sbjct 92 TCAGCAGGGACGAGGGGCTTCACTGTGACTTTGCTTGCCTCATGTACA---GGAAGTTGA 36 Query 26054 TCCACAAACCTTCTCAAGA 26072 |||||||||||| ||| Sbjct 35 AGTACAAACCTTCTCCAGA 17 >seq242622 Length=209 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| ||| | ||||||| ||||||||| |||| |||||| || ||||| Sbjct 122 GTACAAGTTCTGCGTGTAGGGTTCGAAAGACTCGTTGTTTCCCAAGATCTGTGCAGTGCT 63 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCC 221256 |||||||||||| || |||||||||| |||||||| ||||| Sbjct 62 GGCGGTGGGCATCGGAGCCACCAGCAAGCTGTTGCGAAGTCC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925907003224320