Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq174639 279 5e-70 seq75038 279 5e-70 seq12672 246 3e-60 seq75039 194 2e-44 seq25705 194 2e-44 seq25321 170 2e-37 seq174641 161 1e-34 seq23841 140 3e-28 seq174640 136 4e-27 >seq174639 Length=919 Score = 279 bits (308), Expect = 5e-70 Identities = 515/751 (69%), Gaps = 11/751 (1%) Strand=Plus/Plus Query 8337 TTGCTTC-ATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAAC 8395 |||||| || || || || || ||| ||| | || || || || || || | |||| Sbjct 166 TTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAAC 225 Query 8396 CAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCT 8455 |||| ||||| || || | || || || ||||| || | || || || | || || | Sbjct 226 CAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTT 285 Query 8456 CTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGC 8515 |||| || ||||| | || ||||| || | ||||| | | |||||||||| Sbjct 286 CTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCT 345 Query 8516 TCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTT 8575 | || || |||||| | || || ||||||| | || || | ||||| || ||||| Sbjct 346 TATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGT---TGCTT 402 Query 8576 AT---ATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTG 8632 | |||||| | ||||||||| | || | | | || ||| | || ||||| | || Sbjct 403 GTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTG 462 Query 8633 TTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTC 8692 | || | ||| || ||||||| || |||| ||| ||||| |||| ||||| |||||| Sbjct 463 TAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTC 522 Query 8693 AAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTG 8752 ||| | || || ||||| |||||| | || || || || || || | |||||||| Sbjct 523 AAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTG 582 Query 8753 TCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTG 8812 | ||||| || || || ||||| | ||||| || ||||| || || || || ||||||| Sbjct 583 TGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTG 642 Query 8813 TCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTC 8872 | || || || || | ||| ||||||||||||||| | ||||| ||||| || || Sbjct 643 TATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTG 702 Query 8873 GTGAGAC--CACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGA 8930 || || || | || || ||| ||| || ||||| ||||||||||| || Sbjct 703 CAGAAACTGCAGGAGATATTAGCCT--AAATGTTGGATATAAGTTTGGTCAAGAAGATGA 760 Query 8931 AACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATC 8990 |||||| | ||| || || ||||| || |||||| | | || || |||||||| || Sbjct 761 AACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTC 820 Query 8991 TTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTG 9050 || || || ||| | || | || |||||||| || || ||||| || | || || || Sbjct 821 CTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTG 880 Query 9051 GTTTACCGCCCTCGGCGTCTCGACCATGGCT 9081 ||| || || || || || || |||||| Sbjct 881 GTTCACAGCACTTGGAGTAAGTACAATGGCT 911 >seq75038 Length=481 Score = 279 bits (308), Expect = 5e-70 Identities = 331/449 (74%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 8608 CTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCT 8667 || || ||||| |||||||| ||| || || || | ||| ||||| ||||| |||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 8668 GTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATC 8727 ||||| | | || || |||||||||| || || || ||||| |||||| | || || Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 8728 TCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCC 8787 || || || ||||| | |||| |||| ||||| || ||||| || || | ||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 8788 TTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGT 8847 || || ||| | ||||| |||||||| || || || || | ||||| || ||||||||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 8848 TCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGC 8907 ||| | |||||||| || | ||||||| || || |||| || || ||| ||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 8908 TACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGT 8967 || | ||||| |||||||| ||||| || |||||||| || || ||||| || |||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 8968 CGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCT 9027 || || || ||||||||||| ||||| || || || | || ||||||||| | ||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 9028 GCGTGGCCTGTGGTGGGAATCTGGTTTAC 9056 |||||||| || ||||| ||||| || Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCAC 31 >seq12672 Length=424 Score = 246 bits (272), Expect = 3e-60 Identities = 291/394 (74%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 8663 CTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTG 8722 |||| ||||| | | || || |||||||||| || || || ||||| |||||| | | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 8723 GTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGC 8782 | || || || || ||||| | |||| |||| ||||| || ||||| || || | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 8783 ACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGC 8842 | || || || ||| | ||||| |||||||| || || || || | ||||| || |||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 8843 ATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACT 8902 |||||||| | |||||||| || | ||||||| || || |||| || || ||| Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATG 240 Query 8903 ATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACT 8962 ||| || | ||||| |||||||| ||||| || |||||||| || || ||||| || | Sbjct 241 CTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATT 300 Query 8963 TTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCC 9022 ||||||| || || ||||||||||| ||||| || || || | || ||||||||| Sbjct 301 TTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCT 360 Query 9023 TCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTAC 9056 | ||| |||||||| || ||||| ||||| || Sbjct 361 TAGCTATTTGGCCTGTAGTTGGAATTTGGTTCAC 394 >seq75039 Length=421 Score = 194 bits (214), Expect = 2e-44 Identities = 273/381 (72%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 ||||| |||||| | ||| || |||| || || ||| | || |||||||| ||| | Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCT 8367 ||||| ||||| | | | ||||| | || |||| || || |||||||| ||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCT 262 Query 8368 CCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAAC 8427 || || || || || || || || ||||| ||| |||| || | | || || ||||| Sbjct 261 CCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAAT 202 Query 8428 ATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATC 8487 || || | || || || |||| | || ||||||||||| | || || || || || Sbjct 201 ATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATT 142 Query 8488 TGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTT 8547 |||||||| |||||| | ||||| ||||| || || ||||| ||||| || | | ||| Sbjct 141 TGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTT 82 Query 8548 TTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 | |||||| || | || | | ||||| ||||||| ||||||||||||||||| | || Sbjct 81 TGCCACTTTTTCTTAGGAATTTGTTGCT-ATATGGGACGTGAATGGGAACTTTCGTTTCG 23 Query 8607 CCTTGGCATGCGTCCTTGGAT 8627 || || ||||| |||||||| Sbjct 22 TCTAGGAATGCGCCCTTGGAT 2 >seq25705 Length=358 Score = 194 bits (214), Expect = 2e-44 Identities = 221/297 (74%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 10152 TACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTT 10211 |||| |||||||| | || || || || ||| ||||||| ||||| | || || | Sbjct 301 TACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTCT 242 Query 10212 CTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTT 10271 | || || || || |||| | ||| ||||| || |||||||| || || ||||| | Sbjct 241 CAGGACCAATAGCAGTTTATACATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAGCT 182 Query 10272 GGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGG 10331 |||||||||| || || || || || || || || ||||| ||||| | ||||| || | Sbjct 181 GGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCAAG 122 Query 10332 GCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAG 10391 | |||||||||||||| | ||||| || || |||||||| || ||||| ||| |||||| Sbjct 121 GTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGGAG 62 Query 10392 GGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATG 10448 | || | |||||||| ||||| || | ||||| | ||||| |||||||||||| Sbjct 61 GTGCATTACTATCAGCTATCCATGGTGCTACTGTCGTTAACACTATTTATCAAGATG 5 >seq25321 Length=478 Score = 170 bits (188), Expect = 2e-37 Identities = 250/351 (71%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 ||||| |||||| | ||| || |||| || || ||| | || |||||||| ||| | Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTTGCTGCTCCT 8367 ||||| ||||| | | | ||||| | || |||| || || |||||||| ||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTACCTCTGTATTTATTATTGCTTTTGTTGCTGCACCT 248 Query 8368 CCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAAC 8427 || || || || || || || || ||||| ||| |||| || | | || || ||||| Sbjct 249 CCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAAT 308 Query 8428 ATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATC 8487 || || | || || || |||| | || ||||||||||| | || || || || || Sbjct 309 ATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATT 368 Query 8488 TGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTT 8547 |||||||| |||||| | ||||| ||||| || || ||||| ||||| || | | ||| Sbjct 369 TGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTT 428 Query 8548 TTCCACTTCCTCCTTGGCGTCT-TTGCTTATATGGGTCGTGAATGGGAACT 8597 | |||||| || | || | | |||| |||||||| |||||||||||||| Sbjct 429 TGCCACTTTTTCTTAGGAATTTGTTGC-TATATGGGACGTGAATGGGAACT 478 >seq174641 Length=312 Score = 161 bits (178), Expect = 1e-34 Identities = 209/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 8579 TGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCAT 8638 ||||| | ||||||||| | || | | | || ||| | || ||||| | ||| || | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 8639 ACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTT 8698 ||| || ||||||| || |||| ||| ||||| |||| ||||| ||||||||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 8699 CGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCC 8758 || || ||||| |||||| | || || || || || || | ||||||||| |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 8759 AGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCG 8818 | || || || ||||| | ||||| || ||||| || || || || |||||||| || | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 8819 GCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCT 8867 | || || | ||| ||||||||||||||| | ||||| ||||| || Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq23841 Length=230 Score = 140 bits (154), Expect = 3e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 10486 TCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGG 10545 |||| |||||| || ||||| |||||||| ||||| ||||| ||||| ||| ||||||| Sbjct 27 TCAACCAGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGG 86 Query 10546 AATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGG 10605 | || || || || | |||||||||||||| ||||| ||||||||| | || Sbjct 87 TGTAGCCTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGG 146 Query 10606 TCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTT 10665 | | ||||| ||||| ||||| |||||||| | || | ||||| | ||||| ||||| Sbjct 147 TATGTGGACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTT 206 Query 10666 TGTATCTCAAGA 10677 | | |||||||| Sbjct 207 TATTTCTCAAGA 218 >seq174640 Length=289 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8904 TGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTT 8963 ||| || ||||| ||||||||||| |||||||| | ||| || || ||||| || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 8964 TGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCT 9023 |||| | | || || |||||||| || || || || ||| | || | || |||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 9024 CGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTT 9083 || || ||||| || | || || ||||| || || || || || || |||||||| Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 9084 CAACCTCAATGGCTTCAACTTCAACCAGTCCAT 9116 |||| | ||||| || ||||||||||| ||||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCAT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514846451232000