Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq99093 98.7 8e-16 seq95674 89.7 4e-13 seq99092 84.2 2e-11 >seq99093 Length=221 Score = 98.7 bits (108), Expect = 8e-16 Identities = 118/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || ||||| ||| | || ||| ||||| ||| | || ||||| Sbjct 59 AAGCAAAAATTCAA-GATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCA 117 Query 28692 GGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTA 28749 || |||||||| |||||| | | | ||| | |||||||| |||||||||||||| | Sbjct 118 GGTAAACAATTAGAAGATGGACGTACATTAT--CTGATTATAATATTCAAAAAGAATCGA 175 Query 28750 CTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 |||| ||| |||||||||| | ||||| || | ||| Sbjct 176 CTCTTCACTTGGTATTAAGGCTTCGAGGTGGAACAAT 212 >seq95674 Length=384 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | ||||| || || || || || || || ||| Sbjct 53 ATGCAGATCTTTGTAAAGACACTCACGGGGAAGACAATCACTTTGGAGGTTGAGCCATCA 112 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| ||||| | || ||||||| Sbjct 113 GACACCATTGAAAATGTAAAGGCGAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 172 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| ||||| || |||||||| || || | ||||| ||| Sbjct 173 CAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACGTTGTCTGATTACAAC 232 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||| ||||| ||| |||| Sbjct 233 ATTCAAAAGGAATCCACTCTTCACCTGGT 261 >seq99092 Length=231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || || ||||| ||| | || ||| ||||| ||| | || ||||| Sbjct 59 AAGCAAAAATTCAA-GATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCA 117 Query 28692 GGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTA 28749 || |||||||| |||||| | | | ||| | |||||||| |||||||||||||| | Sbjct 118 GGTAAACAATTAGAAGATGGACGTACATTAT--CTGATTATAATATTCAAAAAGAATCAA 175 Query 28750 CTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | |||| | |||||| | ||| |||| || Sbjct 176 CATTGCATTTAGTATTACGTTTAAGAGGTGG 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424092945717612