Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq75038 306 4e-78 seq174639 304 1e-77 seq12672 269 3e-67 seq75039 199 4e-46 seq174640 176 5e-39 seq25705 176 5e-39 seq25321 168 7e-37 seq174641 165 9e-36 seq251946 107 2e-18 >seq75038 Length=481 Score = 306 bits (338), Expect = 4e-78 Identities = 339/452 (75%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 |||| |||||||| ||||||||| ||||| || || | ||| || || || |||| || Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | || || | | || || | |||||||| || || || |||| ||||||| | || | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 | || || || ||||| | ||| |||| |||||||||||||| || ||| | ||||| | Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 | || |||||| | || ||||| ||||||||||| ||||| | || ||| ||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| ||||||| || || | |||||||||| || ||||| || || || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 |||| | ||||| ||||||||||| || || ||||| || || || || || || || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 ||||| | ||||||||||| ||||| ||||| ||||| ||||| | || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACT 161685 || ||||||||| ||||| || ||||||||| Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACT 30 >seq174639 Length=919 Score = 304 bits (336), Expect = 1e-77 Identities = 553/807 (69%), Gaps = 2/807 (0%) Strand=Plus/Plus Query 160903 AACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCCTGCTTGCTCGCT-GCTAC 160961 || || || || |||| || || || |||| ||| |||||| || | | || || Sbjct 105 AATCGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCCCTCTTTTAACTTTAGCAAC 163 Query 160962 CATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGA 161021 ||| || |||| || || || ||| || | || || || || || || | || Sbjct 164 TATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGA 223 Query 161022 ACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTC 161081 ||| || ||||| || || | ||||| || ||||| || | || ||||| || || Sbjct 224 ACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAG 283 Query 161082 TTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATG 161141 |||||| ||||| || | || ||||| || | ||||| || | | || || || Sbjct 284 TTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTG 343 Query 161142 GCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGC 161201 | || || |||||| | | ||| | || || | || || || |||| | | Sbjct 344 CTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTTGCTTG 403 Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 || |||||| | || |||||| | || | | | || ||| | || ||||| | || Sbjct 404 TTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGT 463 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||| | ||| || ||||| | ||||| |||||| || | || ||||| | ||||| Sbjct 464 AGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCA 523 Query 161322 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGT 161381 || | || || |||| ||||||| | || || ||| || || || | |||||||| Sbjct 524 AGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGT 583 Query 161382 CTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 161441 ||||||||||| || |||||| | ||||| || |||||||| || || ||||| ||||| Sbjct 584 GTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGT 643 Query 161442 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCG 161501 ||||| ||||| | || ||||||||||| ||||| | ||||| ||||| || || Sbjct 644 ATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGC 703 Query 161502 TGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 161561 ||||| | | | | || || ||| || ||||| ||||||||||| || || Sbjct 704 AGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAAC 763 Query 161562 CTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTT 161621 || | ||| || ||||| || || || ||| | || || || ||||| |||||||| Sbjct 764 TTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTCCTT 823 Query 161622 CAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTT 161681 ||| ||||| || || ||||||||||| || |||||||| ||| |||| || ||||| Sbjct 824 CAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGTT 883 Query 161682 CACTGCACTGGGCGTAAGCACCATGGC 161708 ||| ||||| || ||||| || ||||| Sbjct 884 CACAGCACTTGGAGTAAGTACAATGGC 910 >seq12672 Length=424 Score = 269 bits (298), Expect = 3e-67 Identities = 281/369 (76%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 161317 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATG 161376 |||||||| || || || |||| ||||||| | || || || || || ||||| | ||| Sbjct 27 GGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTCAATTTTATG 86 Query 161377 CTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA 161436 |||| |||||||||||||| || ||| | ||||| || || |||||| | || ||||| Sbjct 87 ATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTAGGTGTAGCT 146 Query 161437 GGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTG 161496 ||||||||||| ||||| | || ||| ||||| ||||| ||||||| || || | Sbjct 147 GGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACTTCATCATTA 206 Query 161497 GTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 161556 |||||||||| || ||||| || || || |||||| | ||||| ||||||||| Sbjct 207 ATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCGGACAAGAAGAA 266 Query 161557 GAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCT 161616 || || || ||||| || || || || || || || |||||| | ||||||||||| ||| Sbjct 267 GAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTCCAATATGCT 326 Query 161617 TCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATC 161676 || ||||| ||||| ||||| | || |||||| | ||| ||||||||| ||||| || Sbjct 327 TCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTAGTTGGAATT 386 Query 161677 TGGTTCACT 161685 ||||||||| Sbjct 387 TGGTTCACT 395 >seq75039 Length=421 Score = 199 bits (220), Expect = 4e-46 Identities = 275/382 (72%), Gaps = 2/382 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 |||||| | ||| | || || || || ||||| | ||| |||||||||| || || Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 |||||||| || | | |||||| | ||| || || ||||| || |||| ||| || Sbjct 321 ATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || ||||||||||| || ||||||| | | ||||||||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 203 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || || | || ||| |||| ||| |||| ||||| || ||| | || || || || || Sbjct 202 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 143 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| || | | || |||||||| || || ||||| |||| ||| | |||| Sbjct 142 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 83 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | | || || | | || ||||| ||||| ||||||||||| | || Sbjct 82 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTTCG 23 Query 161235 TCTGGGAATGCGTCCTTGGATT 161256 ||| |||||||| ||||||||| Sbjct 22 TCTAGGAATGCGCCCTTGGATT 1 >seq174640 Length=289 Score = 176 bits (194), Expect = 5e-39 Identities = 171/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 161532 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTT 161591 ||| || ||||| ||||||||||| || || || | ||| || ||||| || || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 161592 CGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCT 161651 ||| | || || || ||||| ||||||||||| ||||| || || ||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 161652 TGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 161711 || |||||||| ||| |||| || |||||||| ||||| || ||||| || ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 161712 CAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGAT 161751 |||| | |||||||| ||||||||||| || ||| | ||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq25705 Length=358 Score = 176 bits (194), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 162453 CTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTC 162512 || || ||||||||| | |||||||| | ||| | ||||| ||||| |||| ||| Sbjct 302 CTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTC 243 Query 162513 TCAGGTCCTATTGCTGT--ATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGT 162570 ||||| || || || || || | | ||| || || || ||||| | || ||||| Sbjct 242 TCAGGACCAATAGCAGTTTATACATC--TGTCTTCCTAATTTATCCACTTGGTCAATCTA 185 Query 162571 CCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCC 162630 ||||||||| ||||| || ||||| || || |||||||||||||| | ||||| | Sbjct 184 GCTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTC 125 Query 162631 AAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTG 162690 |||| || ||||| ||||| |||||||||||||||||||||| ||||| || || | | Sbjct 124 AAGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGG 65 Query 162691 GTGGTGCATTGCTCTCTGCTATTCATGG 162718 | |||||||| || || ||||| ||||| Sbjct 64 GAGGTGCATTACTATCAGCTATCCATGG 37 >seq25321 Length=478 Score = 168 bits (186), Expect = 7e-37 Identities = 285/409 (70%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 160821 AATTACAATGACTGCAACACTTTCGCAACAACGTTC---TACTAACACCTGGGAACAGTT 160877 || || ||||||||||| ||| |||| |||| ||| || |||| | || Sbjct 74 AAATAAAATGACTGCAA---TTTTACAACGACGTGAGAGTACAAATTTATGGGCTCGCTT 130 Query 160878 TTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGAT 160937 |||| | ||| | || || || || ||||| | ||| |||||||||| || || || Sbjct 131 TTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGCAT 190 Query 160938 GATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCC 160996 |||||| || | | |||||| | ||| || || ||||| || |||| ||| || | Sbjct 191 GATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACCTC 249 Query 160997 CTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACA 161056 | || || || || || ||||||||||| || ||||||| | | ||||||||||| | Sbjct 250 CAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAATA 309 Query 161057 TCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCT 161116 | || | || ||| |||| ||| |||| ||||| || ||| | || || || || || | Sbjct 310 TTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAATTT 369 Query 161117 GGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGT 161176 ||||||| || | | || |||||||| || || ||||| |||| ||| | |||| | Sbjct 370 GGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGTTT 429 Query 161177 TCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225 |||||| | | || || | | || ||||| ||||| |||||||| Sbjct 430 GCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq174641 Length=312 Score = 165 bits (182), Expect = 9e-36 Identities = 210/289 (73%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 161207 TGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCAT 161266 ||||| | || |||||| | || | | | || ||| | || ||||| | ||||| | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 161267 ACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTT 161326 ||| || ||||| | ||||| |||||| || | || ||||| | ||||||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 161327 CTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCC 161386 || || |||| ||||||| | || || ||| || || || | |||||||| |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 161387 AAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTG 161446 ||||||| || |||||| | ||||| || |||||||| || || ||||| ||||| |||| Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 161447 GCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCT 161495 | ||||| | || ||||||||||| ||||| | ||||| ||||| || Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACT 24 >seq251946 Length=233 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 161101 CACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCT 161160 ||||| || || || |||||||| ||| | | || |||||| | || || ||||| ||| Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 161161 TTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGG 161220 | || | ||||| | || || | | || ||| | ||| || |||||||||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 161221 GAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTC 161280 ||||| ||| ||| | || |||||||| ||||| | || || | | | || ||||| Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 161281 GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGG 161324 || ||||| ||||| || || || ||||| | |||||||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546014757768480