Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq75038 253 6e-63 seq75039 223 1e-53 seq12672 212 2e-50 seq25321 206 8e-49 seq251946 136 1e-27 seq174640 118 3e-22 >seq75038 Length=481 Score = 253 bits (280), Expect = 6e-63 Identities = 347/482 (72%), Gaps = 6/482 (1%) Strand=Plus/Plus Query 17979 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCA 18038 ||||| ||||| || || ||||| | ||| || | ||| || | | || |||||| | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 18039 GCCAAGAAGAAATGTAGACTCCT---GCTATTGTTAAAGCTAGCATACTGGAAGATGAGT 18095 || ||||||||||||| | | | ||||| |||| |||||| ||||| || | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTG--AAAGA-AGCATATTGGAAAATTAAA 117 Query 18096 CTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTA 18155 | ||||| || ||||| || || ||||| ||||| || ||||||||||| || ||| || Sbjct 118 CGACCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTA 177 Query 18156 TATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGA 18215 || ||| || || ||| ||||| ||||| | ||| | ||| |||||||| | Sbjct 178 TAACCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAAT 237 Query 18216 CTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGG 18275 || |||||||||| ||||| | ||||| || || || || ||||| | |||||| Sbjct 238 GAACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGA 297 Query 18276 AACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCG 18335 || |||||||| | ||||| || || |||||||| || | ||| ||||||||||| || Sbjct 298 AAAGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCT 357 Query 18336 CTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAAT 18395 ||| || | |||||| ||||| || || ||||| |||| || |||| | |||| Sbjct 358 GAAATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAAT 417 Query 18396 ACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCT 18455 || | |||||||| ||||| | |||||||| ||| |||||| |||||||| ||| Sbjct 418 ACCGCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCT 477 Query 18456 AG 18457 || Sbjct 478 AG 479 >seq75039 Length=421 Score = 223 bits (246), Expect = 1e-53 Identities = 280/382 (73%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 18437 AATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGC 18496 |||||| |||||||| ||||| | | | ||||||||||| |||||||| | ||| | Sbjct 1 AATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATAT-AGCAAC 59 Query 18497 -GATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACT 18555 || || | || ||||||| | ||||| | |||||| ||||| || ||||||| ||| | Sbjct 60 AAATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATT 119 Query 18556 CGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACG 18615 | || | | ||||||||||| ||||| || || || | ||| |||||||| || | | Sbjct 120 CATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAG 179 Query 18616 GGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCAC 18675 | | || ||||||| || || ||||||||||| | ||| | || || ||||| |||| Sbjct 180 GAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCAC 239 Query 18676 GAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTG 18735 |||| ||||| || || || ||||| ||||||||||| ||||| | |||| | | | | Sbjct 240 GAATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAG 299 Query 18736 CGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTG 18795 | ||||| | | || ||||| || |||||||| || | || | ||||| | || Sbjct 300 CTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTG 359 Query 18796 TACTCGTAACCCAGTCACATAA 18817 |||| |||| ||| ||||| || Sbjct 360 TACTAGTAATCCATTCACAAAA 381 >seq12672 Length=424 Score = 212 bits (234), Expect = 2e-50 Identities = 302/422 (72%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 17979 TTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGCCAAGCA 18038 ||||| ||||| || || ||||| | ||| || | ||| || | | || |||||| | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 18039 GCCAAGAAGAAATGTAGACTCCT---GCTATTGTTAAAGCTAGCATACTGGAAGATGAGT 18095 || ||||||||||||| | | | ||||| |||| |||||| ||||| || | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTG--AAAGA-AGCATATTGGAAAATTAAA 308 Query 18096 CTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATTTA 18155 | ||||| || ||||| || || ||||| ||||| || ||||||||||| || ||| || Sbjct 307 CGACCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTA 248 Query 18156 TATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAAGA 18215 || ||| || || ||| ||||| ||||| | ||| | ||| |||||||| | Sbjct 247 TAACCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAAT 188 Query 18216 CTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGG 18275 || |||||||||| ||||| | ||||| || || || || ||||| | |||||| Sbjct 187 GAACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGA 128 Query 18276 AACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCG 18335 || |||||||| | ||||| || || |||||||| || | ||| ||||||||||| || Sbjct 127 AAAGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCT 68 Query 18336 CTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAACGAGAAAT 18395 ||| || | |||||| ||||| || || ||||| |||| || |||| | |||| Sbjct 67 GAAATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAAT 8 Query 18396 AC 18397 || Sbjct 7 AC 6 >seq25321 Length=478 Score = 206 bits (228), Expect = 8e-49 Identities = 258/351 (74%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 18468 AGTTCCCATTGTCGTCCCATGTAAGCTGCGA-TGCCGATGAGAAAGTGGAACACAATGAG 18526 |||||||||| |||||||| || || | | | || | || ||||||| | ||||| | Sbjct 478 AGTTCCCATTCACGTCCCATATA-GCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAA 420 Query 18527 TTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTA 18586 |||||| ||||| || ||||||| ||| || || | | ||||||||||| ||||| || Sbjct 419 TTGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATA 360 Query 18587 GAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCC 18646 || || | ||| |||||||| || | || | || ||||||| || || |||||||| Sbjct 359 AAAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCC 300 Query 18647 ATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGC 18706 ||| | ||| | || || ||||| |||||||| ||||| || ||||| ||||| ||||| Sbjct 299 ATATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGC 240 Query 18707 AACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCC 18766 |||||| ||||| | |||| | | | || ||||| | | || ||||| || || Sbjct 239 AACAAAAGCAATAATAAATACAGAGGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCC 180 Query 18767 AAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 |||||| || | || | ||||| | |||||| |||| ||| ||||| || Sbjct 179 AAACCAACCAATATATAATCGGTTATCTGTACTAGTAATCCATTCACAAAA 129 >seq251946 Length=233 Score = 136 bits (150), Expect = 1e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 18365 ACTCCCTTGTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGA 18424 ||| ||||| |||| ||||| || ||||| |||| || |||||||| ||||| | Sbjct 1 ACTTCCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGT 60 Query 18425 ATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCC 18484 |||||||| | ||||| || |||||||||| | |||||| |||||||| | || || Sbjct 61 GAAAGCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACC 120 Query 18485 CATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTT 18544 || ||| || || | | ||| || | |||||| | || ||| || || || || Sbjct 121 AATATAACAACAGACCCCTAATAAAAAATGTAGCACAATCAATTCATAAGGGCCACCATT 180 Query 18545 ATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGAC 18597 ||||||||| || || | | |||||||||||| ||||| || ||||||| || Sbjct 181 ATATAACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTGAATAC 233 >seq174640 Length=289 Score = 118 bits (130), Expect = 3e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 17949 ATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAG 18008 ||||||||||||||||| || ||||| | || |||||||| || | ||| | | Sbjct 44 ATGGATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAAGTGCT 103 Query 18009 GTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTG 18068 || | ||| || | | | || |||||||| || | |||||| || ||||| | || Sbjct 104 GTGAACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTA 163 Query 18069 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTA 18128 || ||| |||||| || || |||||||| ||||| || ||||| || || || || Sbjct 164 TTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTA 223 Query 18129 TACGTCTCTTCTTCTTGGCCAAATTTATATCCA 18161 || || || |||||||| ||||| ||||||||| Sbjct 224 TAAGTTTCATCTTCTTGACCAAACTTATATCCA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150863732468632