Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq75038 288 1e-72 seq12672 250 3e-61 seq174639 246 4e-60 seq75039 219 5e-52 seq25321 197 2e-45 seq25705 156 5e-33 seq174641 152 6e-32 seq23841 131 2e-25 seq251946 111 2e-19 seq174640 89.7 6e-13 >seq75038 Length=481 Score = 288 bits (318), Expect = 1e-72 Identities = 302/397 (76%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||| ||||| || || |||||||| || |||||||| || |||||||| || ||||| Sbjct 85 GAGTTATTGAAAGAAGCATATTGGAAAATTAAACGACCAAAATAACCATGTGCTGCTACA 144 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 ||||| ||||| ||||| ||||||||||| | |||||| ||| |||||| ||||| Sbjct 145 ATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAACCAGCATTTGTTGATTCATTTTCA 204 Query 103523 GTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAA 103582 || || ||||||| | || || ||||| | ||||| ||||||||| || | |||| Sbjct 205 GTTGTTTCACGAATTAATGATGAAGTAACCAATGAACCATGCATAGCAGAAAATAATGAA 264 Query 103583 CCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCG 103642 ||||| || || ||||| || || | ||| || || || ||||| | ||| ||||| || Sbjct 265 CCACCAAACACACCAGCTACACCTAACATATGAAAAGGATGCATTAAAATATTATGCTCT 324 Query 103643 GCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAG 103702 |||||||| || | ||| | ||||| ||||| ||||| || |||||||| |||| || Sbjct 325 GCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAAATTCCTAAAGGCATTCCATCCGAA 384 Query 103703 AACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCA 103762 || || |||||||||| ||||| | || ||||| || | |||||| ||||| ||| | Sbjct 385 AATGATCCTTGACCAATTGGGTAAATTAAAAATACCGCAGTCGCAGCTGCAACTGGACCT 444 Query 103763 GAGTATGCGACACAGATCCAGGGGCGCATGCCCAGAC 103799 || || || ||| ||||| |||||||| || |||| Sbjct 445 GAATAAGCTACAGCAATCCAAGGGCGCATTCCTAGAC 481 >seq12672 Length=424 Score = 250 bits (276), Expect = 3e-61 Identities = 258/338 (76%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||| ||||| || || |||||||| || |||||||| || |||||||| || ||||| Sbjct 340 GAGTTATTGAAAGAAGCATATTGGAAAATTAAACGACCAAAATAACCATGTGCTGCTACA 281 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 ||||| ||||| ||||| ||||||||||| | |||||| ||| |||||| ||||| Sbjct 280 ATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAACCAGCATTTGTTGATTCATTTTCA 221 Query 103523 GTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAA 103582 || || ||||||| | || || ||||| | ||||| ||||||||| || | |||| Sbjct 220 GTTGTTTCACGAATTAATGATGAAGTAACCAATGAACCATGCATAGCAGAAAATAATGAA 161 Query 103583 CCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCG 103642 ||||| || || ||||| || || | ||| || || || ||||| | ||| ||||| || Sbjct 160 CCACCAAACACACCAGCTACACCTAACATATGAAAAGGATGCATTAAAATATTATGCTCT 101 Query 103643 GCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAG 103702 |||||||| || | ||| | ||||| ||||| ||||| || |||||||| |||| || Sbjct 100 GCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAAATTCCTAAAGGCATTCCATCCGAA 41 Query 103703 AACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGC 103740 || || |||||||||| ||||| | || ||||| || Sbjct 40 AATGATCCTTGACCAATTGGGTAAATTAAAAATACCGC 3 >seq174639 Length=919 Score = 246 bits (272), Expect = 4e-60 Identities = 513/752 (68%), Gaps = 28/752 (4%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||| ||||| || || ||||| || || | | ||| || |||||||| || ||| Sbjct 832 GAGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGAT 773 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAG--AT-TCAGTT 103519 ||| | || || || || ||||| || ||||| || ||| ||| | || || | Sbjct 772 ATGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCAACATTTAGGCTAATATCTCCT 713 Query 103520 TCAGTCGTCT-CACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAG 103578 |||| ||| || ||| | || || ||||| | ||||| ||||| ||||| || | Sbjct 712 GCAGTT-TCTGCAAGAA---GTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAA 657 Query 103579 TGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATG 103638 |||||| || || || ||||| || || || || ||||| || ||||| | ||||||||| Sbjct 656 TGAACCTCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATG 597 Query 103639 TTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATC 103698 ||| |||||||| || ||||| | || || ||||| || || |||||||| |||| Sbjct 596 TTCTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATC 537 Query 103699 GGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGG 103758 ||| || | ||||||||| || || || | |||||||| | || || ||||||| Sbjct 536 GGAAAAGCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGG 477 Query 103759 AGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTC 103818 || ||| | || ||| | ||||| || | ||| || | | | | |||||||| || Sbjct 476 TGCTGAGAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAACTGAATTCCCATTC 417 Query 103819 ACGTCCCAT---ATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGG 103875 | ||||| | | ||| | |||| | || || | |||||||| ||| | | Sbjct 416 TCTACCCATCCAACAAGCA---ACACCAAGCATAAAATGAAGTACTACAAATTGATATGT 360 Query 103876 ACCACCGTTATACAGCCACTCATCAAGAGATGC---TGCTTCCCAAATGGGATAGAAGTG 103932 |||||| ||||| | |||||||||| || | || ||||||| |||||||| || Sbjct 359 ACCACCATTATATAAGCACTCATCAA---ATCCATTTGACTCCCAAACTGGATAGAAATG 303 Query 103933 AAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACAT 103992 || ||||| || || || || | || || || | || ||||| || || || | Sbjct 302 AACCCCAATAGCATTAGAACTTGGTATTACAGCTCCTGTTATAATGTTATTGCCATAAAG 243 Query 103993 GAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAA 104052 ||||| ||||| || ||||| | || || || ||||| || | |||||| | || Sbjct 242 AAGTGAGCCAGCTACTGGTTCTCTTATTCCATCAATATCTACTGCAGGTGCAAGAATAAA 183 Query 104053 AGCAACGAT-GAAGCAGATGGTTGC---CGCCAACAGAGTTGGGATCATCAGCACACCGA 104108 ||| ||| ||||| || ||||| | || ||| |||| ||| || | ||| | Sbjct 182 AGCTGTGATATAAGCA-ATAGTTGCTAAAGTTAAAAGA---GGGAACATTAGGATACCAA 127 Query 104109 ACCAACCAACATAGAGACGGTTGTTTGTCGAT 104140 | || |||| |||||||| || |||| ||| Sbjct 126 AGCACCCAATGTAGAGACGATTTGTTGTGGAT 95 >seq75039 Length=421 Score = 219 bits (242), Expect = 5e-52 Identities = 284/390 (73%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 103778 ATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAG 103837 ||||| |||||||| || ||||| | || | |||||| |||||||||||||| | | Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATATAGCAACAA 61 Query 103838 ATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCA 103897 || || | || |||||| | || | | ||| |||| ||||| ||||| ||||| ||| Sbjct 62 ATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCA 121 Query 103898 TCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGA 103957 || | ||| || ||||||||||| ||||| || || | |||||||||||| || | ||| Sbjct 122 TCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGA 181 Query 103958 ACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGA 104017 | || || || | || || ||||| || || | | |||||||| || ||||||||| Sbjct 182 ATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGA 241 Query 104018 ATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGC 104076 || || || ||||| || |||||||| || || ||||||| || || |||| ||| || Sbjct 242 ATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGA-GGTAGC 300 Query 104077 CGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT 104136 | || | |||||| ||||| || || |||||||||| ||| | ||||| | ||| Sbjct 301 TGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTGT 360 Query 104137 CGATGTAACCCACTCGCAGAAGTTATCCCA 104166 |||| ||| || || ||| | |||| Sbjct 361 ACTAGTAATCCATTCACAAAAGCGAGCCCA 390 >seq25321 Length=478 Score = 197 bits (218), Expect = 2e-45 Identities = 260/358 (73%), Gaps = 2/358 (1%) Strand=Plus/Minus Query 103810 TTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTG 103869 |||||| |||||||||||||| | | || || | || |||||| | || | | ||| Sbjct 476 TTCCCATTCACGTCCCATATAGCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAATTG 417 Query 103870 GAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAA 103929 |||| ||||| ||||| ||||| ||||| | ||| || ||||||||||| ||||| || Sbjct 416 ATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATAAAA 357 Query 103930 GTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTA 103989 || | |||||||||||| || | |||| || || || | || || ||||| || || Sbjct 356 ATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCCATA 297 Query 103990 CATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTAC 104049 | | |||||||| || ||||||||||| || || ||||| || |||||||| || || Sbjct 296 TAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGCAAC 237 Query 104050 GAAAGCAACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGA 104108 ||||||| || || |||| ||| || | || | |||||| ||||| || || | Sbjct 236 AAAAGCAATAATAAATACAGA-GGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCCAA 178 Query 104109 ACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCA 104166 ||||||||| ||| | ||||| | ||| |||| ||| || || ||| | |||| Sbjct 177 ACCAACCAATATATAATCGGTTATCTGTACTAGTAATCCATTCACAAAAGCGAGCCCA 120 >seq25705 Length=358 Score = 156 bits (172), Expect = 5e-33 Identities = 194/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 102089 CATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTC 102148 |||||| ||| | |||||| | ||||| |||| ||||| ||||| || | ||| |||| Sbjct 5 CATCTTGATAAATAGTGTTAACGACAGTAGCACCATGGATAGCTGATAGTAATGCACCTC 64 Query 102149 CCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCT 102208 ||| || || || ||||||||||| || || || || | ||||| ||||| || || | Sbjct 65 CCAATATTCCAGCTACACCCATCATGTGAAAAGGATTTAATGTCCAATTATGAAAACCTT 124 Query 102209 GTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAAC 102268 | ||||| | |||||||| || || || ||||| ||||| || ||||||||||| | Sbjct 125 GAAGGAATAATAGGAATCGGAAGATAGCAGCAACCCCAAAGCTTGGTGCAAAGAACCAGC 184 Query 102269 TGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGA 102328 | || || || || ||||| || || || ||| | |||| || || || || |||| Sbjct 185 TAGATTGACCAAGTGGATAAATTAGGAAGACAGATGTATAAACTGCTATTGGTCCTGAGA 244 Query 102329 ACGCAATAGCATTGTACGGACGAATT 102354 | |||| ||||| || || | |||| Sbjct 245 ATGCAAGTGCATTATAAGGTCTAATT 270 >seq174641 Length=312 Score = 152 bits (168), Expect = 6e-32 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 103538 AGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCA 103597 || || || ||||| | ||||| ||||| ||||| || | |||||| || || || ||| Sbjct 24 AGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATGAACCTCCAAATACACCA 83 Query 103598 GCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGC 103657 || || || || || ||||| || ||||| | |||||||||||| |||||||| || ||| Sbjct 84 GCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTTCTGCTTGGAACACAAGC 143 Query 103658 ATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCA 103717 || | || || ||||| || || |||||||| ||||||| || | |||||||| Sbjct 144 ATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGGAAAAGCTAGCTTGACCA 203 Query 103718 AAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAG 103777 | || || || | |||||||| | || || ||||||| || ||| | || ||| | Sbjct 204 ATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGGTGCTGAGAAAGCTACAAAT 263 Query 103778 ATCCAGGGGCGCATGCC 103794 ||||| || | ||| || Sbjct 264 ATCCATGGTCTCATACC 280 >seq23841 Length=230 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101848 GCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATA 101907 |||||| | | ||||| || | ||| |||||||| | || || | || | ||||| Sbjct 230 GCTGCTTTCAATTCTTGAGAAATAAAATCATAAGCTCTTAGATTAAATGCTAATCCAATG 171 Query 101908 ATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAAC 101967 ||||| || ||| |||||||| ||| | ||| ||||| ||||| |||||||| | | Sbjct 170 ATACCAATTGAAGATGTCCACATACCTGCTAGAGGTACAAATAGCATGAAGAAATGAAGC 111 Query 101968 CACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACC 102027 || ||||| || || || | |||||| | |||||||| ||||| || ||||||||| Sbjct 110 CATCTCTTGTTTGAGAAGGCTACACCAAATACCTGAGACCAAAAACGATTAGCTGTAACC 51 Query 102028 ATTGAATAAGTCTCTTC 102044 ||||||||||| ||||| Sbjct 50 ATTGAATAAGTTTCTTC 34 >seq251946 Length=233 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||||| || || || | || ||||| | || || || ||||| || | | | Sbjct 5 CCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGTGAAA 64 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||||| || ||||| || | ||| || | |||||||||||| || ||| Sbjct 65 GCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACCAATA 124 Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888 || | ||| || | | || || | || | | || |||| ||||| ||||| Sbjct 125 TAACAACAGACCCCTAATAAAAAATGTAGCACAATCAATTCATAAGGGCCACCATTATAT 184 Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGAC 103937 | ||| ||||| | |||||| ||||||||||| ||||| ||||||| || Sbjct 185 AACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTGAATAC 233 >seq174640 Length=289 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/220 (66%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 103282 ATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACC 103341 ||| |||||||| ||||||||||| || || || | |||||| ||||| || || || || Sbjct 37 ATCTAGGATGGATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCC 96 Query 103342 AAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 103401 |||||| |||||||| ||||| | ||||| | Sbjct 97 AAGTGCTGTGAACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACG 156 Query 103402 GGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTAC 103461 ||||| ||||| || || ||||| || || | | ||| || |||||||| || ||| Sbjct 157 AGAGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGA 216 Query 103462 GATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCA 103501 ||| | || || || || ||||| || ||||| || ||| Sbjct 217 TATGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631509891510240