Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq174639 280 4e-71 seq75038 251 2e-62 seq12672 219 1e-52 seq174640 172 2e-38 seq75039 149 2e-31 seq25321 140 9e-29 seq251946 107 6e-19 >seq174639 Length=919 Score = 280 bits (310), Expect = 4e-71 Identities = 494/720 (69%), Gaps = 0/720 (0%) Strand=Plus/Minus Query 21620 AGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAG 21679 |||||| ||| || ||||| || | |||||||| || | ||| ||||| || || || Sbjct 911 AGCCATTGTACTTACTCCAAGTGCTGTGAACCAAATCCCAATAACTGGCCAAGCTGCTAG 852 Query 21680 AAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAA 21739 ||||| ||||||||||| || ||||| ||| ||||||||| || || || | |||||| Sbjct 851 GAAGAAGTGAAGACTACGAGAGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAA 792 Query 21740 ATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATA 21799 ||| || || || || || | ||||| || || |||||||||||||| || ||| Sbjct 791 ATAACCATGGGCTGCTGATATGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCAAC 732 Query 21800 GTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTG 21859 || | || ||| | | || || || ||||| || || || | ||| || Sbjct 731 ATTTAGGCTAATATCTCCTGCAGTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATG 672 Query 21860 CATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATG 21919 ||| ||| || || || |||||||| || || || || || || || || ||||| Sbjct 671 CATTGCACTAAATAATGAACCTCCAAATACACCAGCTACTCCTAGGATATGGAATGGATG 612 Query 21920 CATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCC 21979 ||| | ||| || || || || |||||||| ||||| | || || || || ||| || Sbjct 611 CATTAAAATGTTATGTTCTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCC 552 Query 21980 CAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGT 22039 || ||||| |||| ||||| | || |||| |||||||||| || || ||| Sbjct 551 TAAAGGCATTCCATCGGAAAAGCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAA 492 Query 22040 CGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATA 22099 || || | ||||| || ||| | || ||||| ||||| || ||||| |||| || | Sbjct 491 AGCTGCTACAACAGGTGCTGAGAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAA 432 Query 22100 GCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGT 22159 || | |||||| |||| ||||| || | || |||| | || || | ||| Sbjct 431 ACTGAATTCCCATTCTCTACCCATCCAACAAGCAACACCAAGCATAAAATGAAGTACTAC 372 Query 22160 GAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGG 22219 | ||| ||| ||| || || || | || ||||||| | | | ||||||| ||| Sbjct 371 AAATTGATATGTACCACCATTATATAAGCACTCATCAAATCCATTTGACTCCCAAACTGG 312 Query 22220 GTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTT 22279 ||||| || | || || |||||| || || | || ||||||| ||| ||||| || Sbjct 311 ATAGAAATGAACCCCAATAGCATTAGAACTTGGTATTACAGCTCCTGTTATAATGTTATT 252 Query 22280 ACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGC 22339 ||||| | || |||||||| || ||||||| |||||||| || || || | ||||| Sbjct 251 GCCATAAAGAAGTGAGCCAGCTACTGGTTCTCTTATTCCATCAATATCTACTGCAGGTGC 192 >seq75038 Length=481 Score = 251 bits (278), Expect = 2e-62 Identities = 343/479 (72%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 21615 TTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCA 21674 || || ||||| || || | || | | || |||||||| || || |||||||| | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 21675 GCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGA 21734 || | |||||||| | | || || ||||| || |||||||||||| || | ||| Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 |||||||| || || || || ||||| || || || ||||| ||||| || || | ||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 21795 CCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTA 21854 ||| || ||| | | |||||| || |||||||| | ||| || || |||| | Sbjct 181 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 240 Query 21855 CCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAA 21914 || ||||||||||| || || |||||||| || || || ||||| | ||| |||||| Sbjct 241 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 300 Query 21915 GGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGAT 21974 |||||||| | |||||| ||||| || ||||| || | ||| | ||||| || || || Sbjct 301 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 360 Query 21975 ATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACA 22034 || || || ||||| |||| ||||| || || || |||| || |||| | || || Sbjct 361 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 420 Query 22035 GCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAG 22093 ||||||||||| || || ||| | || || || ||| ||||| || | ||| ||||| Sbjct 421 GCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAG 479 >seq12672 Length=424 Score = 219 bits (242), Expect = 1e-52 Identities = 294/409 (72%), Gaps = 0/409 (0%) Strand=Plus/Minus Query 21615 TTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCA 21674 || || ||||| || || | || | | || |||||||| || || |||||||| | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 21675 GCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGA 21734 || | |||||||| | | || || ||||| || |||||||||||| || | ||| Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 21735 CCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAA 21794 |||||||| || || || || ||||| || || || ||||| ||||| || || | ||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 21795 CCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTA 21854 ||| || ||| | | |||||| || |||||||| | ||| || || |||| | Sbjct 244 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 185 Query 21855 CCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAA 21914 || ||||||||||| || || |||||||| || || || ||||| | ||| |||||| Sbjct 184 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 125 Query 21915 GGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGAT 21974 |||||||| | |||||| ||||| || ||||| || | ||| | ||||| || || || Sbjct 124 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 65 Query 21975 ATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAA 22023 || || || ||||| |||| ||||| || || || |||| || |||| Sbjct 64 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAA 16 >seq174640 Length=289 Score = 172 bits (190), Expect = 2e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 |||| | |||||||| ||||| |||||||| |||||||||||||| ||| || |||| Sbjct 39 CTAGGATGGATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAA 98 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 | || | ||||||||||| | ||| ||||| || || || ||||| ||||||||||| | Sbjct 99 GTGCTGTGAACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAG 158 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 | ||||| ||| ||||||||| || || || | ||||||||| || || || || | Sbjct 159 AGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATA 218 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCA 21797 | | ||||| || || |||||||||||||| || ||| Sbjct 219 TGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCA 256 >seq75039 Length=421 Score = 149 bits (164), Expect = 2e-31 Identities = 248/356 (70%), Gaps = 2/356 (1%) Strand=Plus/Plus Query 22074 ATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-A 22132 ||||| || | ||| ||||| ||| | ||||||||| || |||||||| || |||| | Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATATA-GCAACA 60 Query 22133 GACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTC 22192 | || | || |||||| | || | | ||| | || || || || || |||||||| Sbjct 61 AATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTC 120 Query 22193 ATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGG 22252 ||| | | |||||||||||||||||| || || |||| || || || || | || Sbjct 121 ATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGG 180 Query 22253 AACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCG 22312 || | || |||| || || ||||| ||||| || | || |||| || ||||| || Sbjct 181 AATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACG 240 Query 22313 GATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGC 22372 |||||||| || || || || ||||| ||||||| || |||||||| || ||||| Sbjct 241 AATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAGC 300 Query 22373 GGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTAT 22428 | | | |||||||| ||||| ||||| || | ||| | ||||||| Sbjct 301 TGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTAT 356 >seq25321 Length=478 Score = 140 bits (154), Expect = 9e-29 Identities = 228/326 (70%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGAATACGGTGAG 22162 |||||||| || |||||||| || |||| | | || | || |||||| | || | | Sbjct 478 AGTTCCCATTCACGTCCCATATA-GCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAA 420 Query 22163 TTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTA 22222 ||| | || || || || || ||||||||||| | | |||||||||||||||||| || Sbjct 419 TTGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATA 360 Query 22223 GAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACC 22282 || |||| || || || || | |||| | || |||| || || ||||| || Sbjct 359 AAAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCC 300 Query 22283 ATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCC 22342 ||| || | || |||| || ||||| || |||||||| || ||||| || ||||| | Sbjct 299 ATATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGC 240 Query 22343 AACAAAGGCGATAATAAAACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCC 22402 |||||| || |||||||| || ||||| | | | |||||||| ||||| Sbjct 239 AACAAAAGCAATAATAAATACAGAGGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCC 180 Query 22403 GAACCATCCTACATAAAGACGGTTAT 22428 ||||| || | ||| | ||||||| Sbjct 179 AAACCAACCAATATATAATCGGTTAT 154 >seq251946 Length=233 Score = 107 bits (118), Expect = 6e-19 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 22005 CCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTAC 22064 || || |||| ||||| ||||| || || || | || || || ||||| || | | | Sbjct 5 CCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGTGAAA 64 Query 22065 GCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATG 22124 |||||| ||||||| || | ||| |||| ||||| || ||||||||||| || || || Sbjct 65 GCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACCAATA 124 Query 22125 TAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTAC 22184 ||| | |||| || | | || || | || | | || | || || || || || Sbjct 125 TAACAACAGACCCCTAATAAAAAATGTAGCACAATCAATTCATAAGGGCCACCATTATAT 184 Query 22185 AGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 | ||||||||| | | ||||||||||||||||| || ||||| Sbjct 185 AACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145768687725840