Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq187601 127 1e-24 seq187600 127 1e-24 seq187602 118 5e-22 >seq187601 Length=2838 Score = 127 bits (140), Expect = 1e-24 Identities = 287/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| |||||||||| ||| | || || || | || | | ||||||||| Sbjct 1891 CATAAAGAGATCAGGAATCCACAAAGCAAAGAACAAGTCACGAGCACGCTGTTCTTCTTT 1950 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| | | || || |||||||| || || ||||||||||| || | Sbjct 1951 TCCTGTG-TTCTTCCTCAAGTCCAAAAAATCAAAGATGTCACTATGCCATGGTTCCAAGT 2009 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| |||| ||| || || ||||| || || || ||||||||| ||| Sbjct 2010 ATATAGCAAAGGCACCTGGTCTCTTATTGCCTCCTTGGTCGACATACCTTGCAGTTGCAT 2069 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG----TGCTATGAATC 26167 || |||| ||||||||| || | || |||| | ||| || | |||||| | | Sbjct 2070 TGTAAACACGCAACATTGGTACCAGACCGTTTGAGACTCCATTGGTCCCTGCTATATAGC 2129 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | || | | ||| || | || ||| ||||| ||||||||||| |||| || Sbjct 2130 T----CCCAGAAGCTCTGATGTTATGCACATTGATACCAATTCCACCAGCTGATTTGGAG 2185 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 || |||||| | ||| || |||| || | ||||||||| || |||| Sbjct 2186 ATTCTAGCACAAGTCATCAGTGTTTCATAAATGCCATCAATGCTATCATCTGACATTGTC 2245 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 || || ||||| || | || | | | ||||| ||||| || | |||||| | Sbjct 2246 AACAAGAAACAGCTTGACAGCTGTGGTTTACAAGTTCCAGAATTGAAGAGTGTCGGAGAG 2305 Query 26348 GCATGAGT 26355 ||||| || Sbjct 2306 GCATGTGT 2313 >seq187600 Length=3805 Score = 127 bits (140), Expect = 1e-24 Identities = 287/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| |||||||||| ||| | || || || | || | | ||||||||| Sbjct 2858 CATAAAGAGATCAGGAATCCACAAAGCAAAGAACAAGTCACGAGCACGCTGTTCTTCTTT 2917 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| | | || || |||||||| || || ||||||||||| || | Sbjct 2918 TCCTGTG-TTCTTCCTCAAGTCCAAAAAATCAAAGATGTCACTATGCCATGGTTCCAAGT 2976 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| |||| ||| || || ||||| || || || ||||||||| ||| Sbjct 2977 ATATAGCAAAGGCACCTGGTCTCTTATTGCCTCCTTGGTCGACATACCTTGCAGTTGCAT 3036 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG----TGCTATGAATC 26167 || |||| ||||||||| || | || |||| | ||| || | |||||| | | Sbjct 3037 TGTAAACACGCAACATTGGTACCAGACCGTTTGAGACTCCATTGGTCCCTGCTATATAGC 3096 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | || | | ||| || | || ||| ||||| ||||||||||| |||| || Sbjct 3097 T----CCCAGAAGCTCTGATGTTATGCACATTGATACCAATTCCACCAGCTGATTTGGAG 3152 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 || |||||| | ||| || |||| || | ||||||||| || |||| Sbjct 3153 ATTCTAGCACAAGTCATCAGTGTTTCATAAATGCCATCAATGCTATCATCTGACATTGTC 3212 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 || || ||||| || | || | | | ||||| ||||| || | |||||| | Sbjct 3213 AACAAGAAACAGCTTGACAGCTGTGGTTTACAAGTTCCAGAATTGAAGAGTGTCGGAGAG 3272 Query 26348 GCATGAGT 26355 ||||| || Sbjct 3273 GCATGTGT 3280 Score = 118 bits (130), Expect = 5e-22 Identities = 285/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| |||||||||| ||| | || || || | || | | ||||||||| Sbjct 795 CATAAAGAGATCAGGAATCCACAAAGCAAAGAACAAGTCACGAGCACGCTGTTCTTCTTT 736 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| | | || ||||||||||| || || ||||||||||| || | Sbjct 735 TCCTGTG-TTCTTCCTCAAGTCCAAGAAATCAAAGATGTCACTATGCCATGGTTCCAAGT 677 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| |||| ||| || || ||||| || || || |||||||| ||| Sbjct 676 ATATAGCAAAGGCACCTGGTCTCTTATTGCCTCCTTGGTCGACATACCTTGCAGTCGCAT 617 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG----TGCTATGAATC 26167 || |||| ||||||||| || | || | || | ||| || | |||||| | | Sbjct 616 TGTAAACACGCAACATTGGTACCAGACCGTTCGAGACTCCATTGGTCCCTGCTATATAGC 557 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | || | | ||| || | || ||| ||||| ||||||||||| |||| || Sbjct 556 T----CCCAGAAGCTCTGATGTTATGCACATTGATACCAATTCCACCAGCTGATTTGGAG 501 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 || |||||| | ||| || |||| || | ||||||||| || |||| Sbjct 500 ATTCTAGCACAAGTCATCAGTGTTTCATAAATGCCATCAATGCTATCATCTGACATTGTC 441 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 | || ||||| || | || | | | ||||| ||||| || | |||||| | Sbjct 440 AGCAAGAAACAGCTGGACAGCTGTGGTTTACAAGTTCCAGAATTGAAGAGTGTCGGAGAG 381 Query 26348 GCATGAGT 26355 ||||| || Sbjct 380 GCATGTGT 373 >seq187602 Length=2693 Score = 118 bits (130), Expect = 5e-22 Identities = 285/428 (67%), Gaps = 10/428 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| |||||||||| ||| | || || || | || | | ||||||||| Sbjct 795 CATAAAGAGATCAGGAATCCACAAAGCAAAGAACAAGTCACGAGCACGCTGTTCTTCTTT 736 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||| | | || ||||||||||| || || ||||||||||| || | Sbjct 735 TCCTGTG-TTCTTCCTCAAGTCCAAGAAATCAAAGATGTCACTATGCCATGGTTCCAAGT 677 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | |||||||| |||| ||| || || ||||| || || || |||||||| ||| Sbjct 676 ATATAGCAAAGGCACCTGGTCTCTTATTGCCTCCTTGGTCGACATACCTTGCAGTCGCAT 617 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG----TGCTATGAATC 26167 || |||| ||||||||| || | || | || | ||| || | |||||| | | Sbjct 616 TGTAAACACGCAACATTGGTACCAGACCGTTCGAGACTCCATTGGTCCCTGCTATATAGC 557 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | || | | ||| || | || ||| ||||| ||||||||||| |||| || Sbjct 556 T----CCCAGAAGCTCTGATGTTATGCACATTGATACCAATTCCACCAGCTGATTTGGAG 501 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 || |||||| | ||| || |||| || | ||||||||| || |||| Sbjct 500 ATTCTAGCACAAGTCATCAGTGTTTCATAAATGCCATCAATGCTATCATCTGACATTGTC 441 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 | || ||||| || | || | | | ||||| ||||| || | |||||| | Sbjct 440 AGCAAGAAACAGCTGGACAGCTGTGGTTTACAAGTTCCAGAATTGAAGAGTGTCGGAGAG 381 Query 26348 GCATGAGT 26355 ||||| || Sbjct 380 GCATGTGT 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252259680625100