Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq174639 354 1e-92 seq75038 295 8e-75 seq12672 279 6e-70 seq75039 217 2e-51 seq25321 212 8e-50 seq174641 197 2e-45 seq174640 127 3e-24 seq251946 111 2e-19 >seq174639 Length=919 Score = 354 bits (392), Expect = 1e-92 Identities = 547/774 (71%), Gaps = 14/774 (2%) Strand=Plus/Minus Query 8065 GTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTG 8124 || ||||||| | | |||||| | | || ||||||||||||||||| | | ||| Sbjct 886 GTGAACCAAATCCCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTA 827 Query 8125 TTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTA 8184 || || || ||||| || || || | ||||||||| || ||||| || || || || Sbjct 826 TTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTA 767 Query 8185 TAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTT----CTGAGACTCTTCTTCAGT 8240 || || || |||||||||||||||||||| ||| || || | | ||| || |||| Sbjct 766 TAAGTTTCATCTTCTTGACCAAACTTATATCCAACATTTAGGCTAATA-TCTCCTGCAGT 708 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 | ||| | || |||||||||||||| ||||| ||||| ||||| || | ||| || Sbjct 707 T---TCTGCAAGAAGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATGAACC 651 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 || || | ||| ||||| ||| |||||||| |||||||| | ||||||||| ||||| Sbjct 650 TCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTTCTGC 591 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 |||||| || | ||| || ||||| || ||| || |||| |||||||||||| || || Sbjct 590 TTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGGAAAA 531 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 | | ||||||| |||||| || | || ||||| ||||| || || || || Sbjct 530 GCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGGTGCTGA 471 Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACC 8540 | |||||| | |||||||||||||||||||| | | | || ||||| | |||||| Sbjct 470 GAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAACTGAATTCCCATTCTCTACC 411 Query 8541 CATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 ||| || || || |||| | || || | | || || ||||||| ||| || || Sbjct 410 CATCCAACAAGCAACACCAAGCATAAAATGAAGTACTACAAATTGATATGTACCACCATT 351 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 ||| || |||||||| ||| | ||||||| |||||||| || | |||||||| Sbjct 350 ATATAAGCACTCATCAAATCCATTTGACTCCCAAACTGGATAGAAATGAACCCCAATAGC 291 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 || ||| ||| | ||||| || | || ||||| || ||||| | | ||| || || Sbjct 290 ATTAGAACTTGGTATTACAGCTCCTGTTATAATGTTATTGCCATAAAGAAGTGAGCCAGC 231 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATA-A 8779 || ||||| | || || || ||||| || | || ||| |||||| || |||| | Sbjct 230 TACTGGTTCTCTTATTCCATCAATATCTACTGCAGGTGCAAGAATAAAAGCTGTGATATA 171 Query 8780 AGCA--AGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACC 8831 |||| ||| || || ||| ||| ||| | |||||| | ||||| || || Sbjct 170 AGCAATAGTTGCTAAAGTTAA-AAG--AGGGAACATTAGGATACCAAAGCACCC 120 >seq75038 Length=481 Score = 295 bits (326), Expect = 8e-75 Identities = 352/478 (74%), Gaps = 0/478 (0%) Strand=Plus/Plus Query 8035 TTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTA 8094 |||||||||||||| |||| || | |||||| ||||||| | || || || | || Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 8095 GCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTA 8154 || | |||||| || | | | ||| || || || ||||| ||||| ||||| | | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 8155 CCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAA 8214 ||||| || ||||| || || ||||| ||||| || ||||||||||| || || ||||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 8215 CCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA 8274 ||| || || || | ||||||||| || | |||| || || ||||| || ||| Sbjct 181 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 240 Query 8275 CCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAA 8334 || ||||||||| || | ||| ||||| |||| ||| ||||| ||| |||||| ||| Sbjct 241 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 300 Query 8335 GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAA 8394 |||||||| | ||| ||||||||||||||||| || | ||| || || || || || ||| Sbjct 301 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 360 Query 8395 ATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACT 8454 || |||| |||||||||||| || ||||| || ||||||| ||| || | ||| || || Sbjct 361 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 420 Query 8455 GCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTA 8512 || ||||| | |||||| | ||| |||||| ||||| || | ||| |||| Sbjct 421 GCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTA 478 >seq12672 Length=424 Score = 279 bits (308), Expect = 6e-70 Identities = 315/422 (75%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 8035 TTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTA 8094 |||||||||||||| |||| || | |||||| ||||||| | || || || | || Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 8095 GCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTA 8154 || | |||||| || | | | ||| || || || ||||| ||||| ||||| | | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 8155 CCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAA 8214 ||||| || ||||| || || ||||| ||||| || ||||||||||| || || ||||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 8215 CCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA 8274 ||| || || || | ||||||||| || | |||| || || ||||| || ||| Sbjct 244 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 185 Query 8275 CCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAA 8334 || ||||||||| || | ||| ||||| |||| ||| ||||| ||| |||||| ||| Sbjct 184 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 125 Query 8335 GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAA 8394 |||||||| | ||| ||||||||||||||||| || | ||| || || || || || ||| Sbjct 124 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 65 Query 8395 ATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACT 8454 || |||| |||||||||||| || ||||| || ||||||| ||| || | ||| || || Sbjct 64 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 5 Query 8455 GC 8456 || Sbjct 4 GC 3 >seq75039 Length=421 Score = 217 bits (240), Expect = 2e-51 Identities = 276/380 (73%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||||| || | ||| |||| || | || | ||||| | | ||||| || | || Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCCCATATAGCAACAA 61 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 ||||| | | |||||| | | || || ||||| || || || ||||| | ||| ||| Sbjct 62 ATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCA 121 Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673 ||||| | |||||||||||||| ||||| || ||||| ||||| ||||| |||| ||| Sbjct 122 TCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGA 181 Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733 | | ||| || | || || ||||||||||| | |||||||| | ||||||||||||| Sbjct 182 ATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGA 241 Query 8734 ATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCA 8793 || || || ||||| || || || ||||||| ||| || | ||||| || | ||| Sbjct 242 ATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAGCT 301 Query 8794 GCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTA 8853 | ||| || |||||||| ||||||||||||||| | ||| | || ||| | |||| Sbjct 302 GTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTGTA 361 Query 8854 CTTGTAACCCACTCGCAAAA 8873 || |||| ||| || ||||| Sbjct 362 CTAGTAATCCATTCACAAAA 381 >seq25321 Length=478 Score = 212 bits (234), Expect = 8e-50 Identities = 248/335 (74%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 8539 CCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCG 8598 ||||| || | ||||||| | | |||||| | | || || ||||| || || || Sbjct 463 CCCATATAGCAACAAATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCA 404 Query 8599 TTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATA 8658 ||||| | ||| |||||||| | |||||||||||||| ||||| || ||||| ||||| Sbjct 403 TTATATAGCCATTCATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATT 344 Query 8659 GCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCT 8718 ||||| |||| |||| | ||| || | || || ||||||||||| | |||||||| Sbjct 343 GCGTTTGAAGTAGGAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCA 284 Query 8719 GCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATA 8778 | ||||||||||||||| || || ||||| || || || ||||||| ||| || | ||| Sbjct 283 GAAACAGGTTCACGAATTCCATCAATATCAACTGGAGGTGCAGCAACAAAAGCAATAATA 224 Query 8779 AAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAA 8838 || || | ||| | ||| || |||||||| ||||||||||||||| | ||| Sbjct 223 AATACAGAGGTAGCTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATAT 164 Query 8839 AGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | || ||| | |||||| |||| ||| || ||||| Sbjct 163 AATCGGTTATCTGTACTAGTAATCCATTCACAAAA 129 >seq174641 Length=312 Score = 197 bits (218), Expect = 2e-45 Identities = 217/289 (75%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCT 8313 || |||||||||||||| ||||| ||||| ||||| || | ||| || || || | ||| Sbjct 24 AGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATGAACCTCCAAATACACCA 83 Query 8314 GCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAAC 8373 ||||| ||| |||||||| |||||||| | ||||||||| ||||||||||| || | | Sbjct 84 GCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTTCTGCTTGGAACACAAGC 143 Query 8374 ATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433 || || ||||| || ||| || |||| |||||||||||| || || | | |||||| Sbjct 144 ATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGGAAAAGCTAGCTTGACCA 203 Query 8434 AATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAG 8493 | |||||| || | || ||||| ||||| || || || || | |||||| | Sbjct 204 ATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGGTGCTGAGAAAGCTACAAAT 263 Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCA 8542 |||||||||||||||||||| | | | || ||||| | |||||||| Sbjct 264 ATCCATGGTCTCATACCTAATCTGAAACTGAATTCCCATTCTCTACCCA 312 >seq174640 Length=289 Score = 127 bits (140), Expect = 3e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 8008 GATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTT 8067 |||||||| ||||| || || || | ||| || |||||||| | | || | | || Sbjct 47 GATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAAGTGCTGTG 106 Query 8068 AACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTA 8127 ||||||| || | |||||| | | || ||||||||||||||||| | | ||| || Sbjct 107 AACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTATTG 166 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 || || ||||| || || || | ||||||||| || ||||| || || || |||| Sbjct 167 AAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTATAA 226 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCA 8217 || || |||||||||||||||||||| ||| Sbjct 227 GTTTCATCTTCTTGACCAAACTTATATCCA 256 >seq251946 Length=233 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 8425 CCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATAT 8484 || ||||||| ||||||||| | || ||||| || || | ||| || || | | Sbjct 5 CCTTGACCAATTGGATATACAAGAAAAACTGCTGCTGCTGCTGCTACAGGTGCCGTGAAA 64 Query 8485 GCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATG 8544 || ||| |||||||||| | ||||||||| || || || ||||||| | ||| || Sbjct 65 GCAACAGAGATCCATGGACGCATACCTAAACGATAACTTAGTTCCCACTCACGACCAATA 124 Query 8545 TAAGCAGAAATTCC-AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATA 8603 ||| | | | || ||||| || || | | || ||| | ||| || || || ||||| Sbjct 125 TAACAACAGACCCCTAATAAAAAA-TGTAGCACAATCAATTCATAAGGGCCACCATTATA 183 Query 8604 CAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTG 8648 ||||| |||||||| | |||||||||||||| ||||| ||||| Sbjct 184 TAACCATTCATCTAAAGATGCAGCTTCCCAAATTGGATAAAAGTG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613914519608160