Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq75038 327 1e-84 seq174639 286 4e-72 seq12672 280 2e-70 seq75039 208 9e-49 seq25321 185 1e-41 seq25705 176 5e-39 seq174640 152 6e-32 seq251946 150 2e-31 seq23841 132 5e-26 >seq75038 Length=481 Score = 327 bits (362), Expect = 1e-84 Identities = 361/481 (75%), Gaps = 0/481 (0%) Strand=Plus/Minus Query 166127 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTG 166186 ||||||| ||||| || ||||| ||| ||||| |||| ||||| || ||||||| || Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 166187 CAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 166246 | ||||| || | || || | |||||||| || || |||| |||||| | |||| Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 166247 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 166306 | |||||||| ||||| | ||| | || |||||||| ||||| |||||| | ||||||| Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 166307 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 166366 | || |||||| | || || ||||| || |||||||| || ||| ||||||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 166367 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 166426 | ||||||||||| || | || | || || ||||||| ||||| ||| | Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 166427 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 166486 |||| | ||||||||||||||||||||||| ||||| ||||| || |||||||| || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 166487 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 166546 ||||||| || |||||||| ||||| ||||| ||||| ||||| || || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 166547 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 166606 || |||||||| || || || |||||||| | | || | || || |||||||| | Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 166607 A 166607 | Sbjct 1 A 1 >seq174639 Length=919 Score = 286 bits (316), Expect = 4e-72 Identities = 554/807 (69%), Gaps = 12/807 (1%) Strand=Plus/Plus Query 165789 CACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCAACTCTGTTGGC 165848 ||||| || ||||| || | || || ||||||| || ||| |||| |||| || | Sbjct 98 CACAACAAATCGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCC--CTCTTTTAAC 154 Query 165849 ---AGCAACTATCTGCTTC-ATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGACG 165904 ||||||||| ||||| ||| || || || ||| || | || || || || | Sbjct 155 TTTAGCAACTAT-TGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATG 213 Query 165905 GCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAG 165964 | || | ||||| || ||||| || || | ||||| || ||||| || | || || | Sbjct 214 GAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTG 273 Query 165965 TTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGC 166024 | | || ||| || || ||||| | || |||||||| | ||||| | | || | Sbjct 274 TAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGA-GTCAAATGGA 332 Query 166025 TT-GACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATT 166083 || || || || | ||||| |||||| | | ||| | || || | || || || || Sbjct 333 TTTGATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTT 392 Query 166084 GGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCA 166143 || | | | |||||| | || |||||| | || | | |||||||| | ||| Sbjct 393 GGTGTTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCA 452 Query 166144 TGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATAT 166203 ||||| | ||| |||| ||||||||| || | || || ||||||||| | || ||| Sbjct 453 TGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTAT 512 Query 166204 CCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAAC 166263 || | ||||||| ||| || || |||| |||||| | ||||| ||||| || || Sbjct 513 CCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAAT 572 Query 166264 TACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGC 166323 | ||| | || |||||||| || || || ||| | |||||||| |||||||| || || Sbjct 573 TTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGA 632 Query 166324 GTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCT 166383 || ||||| |||||||| || || |||||||| ||||| || || ||||| ||| Sbjct 633 GTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCT 692 Query 166384 TCTCTCGTTAGAGAGACGACTGAA-ACCGAATCCCAAAACTACGGTTACAAGTTCGGACA 166442 || || || ||| || | | | | | || ||| | || || ||||| || || Sbjct 693 TCACTTCTTGCAGAAACTGCAGGAGATATTAGCCTAAATGTT-GGATATAAGTTTGGTCA 751 Query 166443 AGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCA 166502 |||||| ||||| || | ||| ||| || |||||||| || ||| | | || || || Sbjct 752 AGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCA 811 Query 166503 ATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGT 166562 ||| ||||| ||||| ||||| || | ||||||||||| || || ||||| ||| | Sbjct 812 ATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTAT 871 Query 166563 CGGCATCTGGTTCACCGCCCTTGGCGT 166589 || || |||||||| || ||||| || Sbjct 872 TGGGATTTGGTTCACAGCACTTGGAGT 898 >seq12672 Length=424 Score = 280 bits (310), Expect = 2e-70 Identities = 316/423 (75%), Gaps = 0/423 (0%) Strand=Plus/Plus Query 166185 TGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGG 166244 ||| ||||| || | || || | |||||||| || || |||| |||||| | || Sbjct 2 TGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGG 61 Query 166245 AATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCA 166304 ||| |||||||| ||||| | ||| | || |||||||| ||||| |||||| | ||||| Sbjct 62 AATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCA 121 Query 166305 TCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCA 166364 ||| || |||||| | || || ||||| || |||||||| || ||| ||||||||| Sbjct 122 TCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCA 181 Query 166365 CGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTA 166424 || ||||||||||| || | || | || || ||||||| ||||| ||| Sbjct 182 TGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGC 241 Query 166425 CGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTT 166484 ||||| | ||||||||||||||||||||||| ||||| ||||| || |||||||| || Sbjct 242 TGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTT 301 Query 166485 CGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCT 166544 |||||||| || |||||||| ||||| ||||| ||||| ||||| || || |||||| | Sbjct 302 TGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTT 361 Query 166545 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATT 166604 ||| |||||||| || || || |||||||| | | || | || || |||||||| Sbjct 362 AGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATT 421 Query 166605 CAA 166607 || Sbjct 422 TAA 424 >seq75039 Length=421 Score = 208 bits (230), Expect = 9e-49 Identities = 279/383 (73%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||| || |||||| |||| || ||| ||||||| | ||| | ||||||||||| | | Sbjct 382 CTTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGG-AGTTT 324 Query 165828 G-ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCT 165885 | |||||||||||| | || |||| || |||| || || | || || | ||||| Sbjct 323 GCATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCA 265 Query 165886 CCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAAC 165945 || || || || || || || || |||||||| || ||||||| | | ||||| ||| Sbjct 264 CCTCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAAC 205 Query 165946 AACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCC 166005 || || || | || || || |||| |||| |||||||||||| |||| || ||||| Sbjct 204 AATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCA 145 Query 166006 ATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTT 166065 || |||||||| || || | || |||||||| ||||| ||||| |||| ||| | || Sbjct 144 ATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATT 85 Query 166066 GTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTAC 166125 || | |||||| | | || || | | ||| ||||| ||||| |||||||| || | Sbjct 84 GTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTT 25 Query 166126 CGTCTAGGTATGCGTCCATGGAT 166148 |||||||| ||||| || ||||| Sbjct 24 CGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 185 bits (204), Expect = 1e-41 Identities = 256/353 (73%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||| || |||||| |||| || ||| ||||||| | ||| | ||||||||||| | | Sbjct 128 CTTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGG-AGTTT 186 Query 165828 G-ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCT 165885 | |||||||||||| | || |||| || |||| || || | || || | ||||| Sbjct 187 GCATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCA 245 Query 165886 CCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAAC 165945 || || || || || || || || |||||||| || ||||||| | | ||||| ||| Sbjct 246 CCTCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAAC 305 Query 165946 AACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCC 166005 || || || | || || || |||| |||| |||||||||||| |||| || ||||| Sbjct 306 AATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCA 365 Query 166006 ATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTT 166065 || |||||||| || || | || |||||||| ||||| ||||| |||| ||| | || Sbjct 366 ATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATT 425 Query 166066 GTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 166118 || | |||||| | | || || | | ||| ||||| ||||| |||||||| Sbjct 426 GTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq25705 Length=358 Score = 176 bits (194), Expect = 5e-39 Identities = 220/299 (74%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 167350 CTTCGACAGTTTGAACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTC 167409 || || ||||||||| | || || || || || | || || ||||| |||| ||| Sbjct 302 CTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTC 243 Query 167410 TCTGGTCCTATTGCTGTCTTCGTTAGC-GTTTTCCTTCTCTATCCCCTCGGTCAAAGCAG 167468 || || || || || || || | | || ||||| | ||||| || |||||| || Sbjct 242 TCAGGACCAATAGCAGT-TTATACATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAG 184 Query 167469 CTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCA 167528 |||||||||||| || ||| || || || || |||||||||||||| | ||||| || Sbjct 183 CTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCA 124 Query 167529 AGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGG 167588 ||| || || || |||||| | ||||| ||||| |||||||||||||| || || |||| Sbjct 123 AGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGG 64 Query 167589 TGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATG 167647 |||||||| || || || |||||||||| ||| || | || ||| | ||| |||||| Sbjct 63 AGGTGCATTACTATCAGCTATCCATGGTGCTACTGTCGTTAACACTATTTATCAAGATG 5 >seq174640 Length=289 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 || || ||||| || |||||||| ||||| || | ||| ||| || |||||||| || Sbjct 255 GGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTT 196 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 166545 ||| | | || || ||||| ||||| ||||| ||||| || | ||||||||||| Sbjct 195 GGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTA 136 Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 166605 || || ||||| ||| | || || |||||||| || ||||| || || ||||| ||| Sbjct 135 GCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTTC 76 Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 166644 ||| | || ||||| ||||||||||| |||||||| ||| Sbjct 75 AACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq251946 Length=233 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 165994 CACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCT 166053 ||||| ||||| || |||||||| ||||| | || |||||| | ||||| ||||| ||| Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 166054 TTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGG 166113 | || || |||| | || || | | || ||| | || || |||||||||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 166114 GAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTC 166173 ||||| ||| ||| ||||||||||||||||||||| |||||||| | | ||||| || Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 166174 GCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGT 166221 || || || ||||| || || |||||||| | |||||||| ||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGGAAGT 1 >seq23841 Length=230 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 167691 AGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGC 167750 |||||| |||||||||||||||||||| || || || ||||||||| | || || | || Sbjct 33 AGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTATTTGGTGTAGC 92 Query 167751 TTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGGGACTTTG 167810 ||| ||||| | |||||||||||||| ||| |||| || || | || | || Sbjct 93 CTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAGCAGGTATGTG 152 Query 167811 GACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTC 167870 |||||| || ||||| |||||||| | || ||||||| | ||||| ||||| |||| Sbjct 153 GACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATGATTTTATTTC 212 Query 167871 TCAAGA 167876 |||||| Sbjct 213 TCAAGA 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559472856763200