Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq174639 280 4e-71 seq75038 251 2e-62 seq12672 219 1e-52 seq174640 172 2e-38 seq75039 149 2e-31 seq25321 140 9e-29 seq251946 107 6e-19 >seq174639 Length=919 Score = 280 bits (310), Expect = 4e-71 Identities = 494/720 (69%), Gaps = 0/720 (0%) Strand=Plus/Plus Query 41348 GCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGT 41407 ||||| | || || || |||||||| ||||||| || |||||||| || | ||||| Sbjct 192 GCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGC 251 Query 41408 AACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTAC 41467 || ||||| ||| ||||||| || | || || |||||| || || | || ||||| Sbjct 252 AATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTAT 311 Query 41468 CCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTC 41527 ||| ||||||| | | | ||||||| || | || || || ||| ||| ||| | Sbjct 312 CCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATTT 371 Query 41528 ACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGC 41587 ||| | || || | |||| || | || ||||| |||| |||||| | || Sbjct 372 GTAGTACTTCATTTTATGCTTGGTGTTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGT 431 Query 41588 TATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCG 41647 | || |||| ||||| || ||||| ||||| || | ||| || ||||| | || || Sbjct 432 TTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCT 491 Query 41648 ACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTG 41707 ||| || || |||||||||| |||| || | ||||| |||| ||||| || Sbjct 492 TTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTA 551 Query 41708 GGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATG 41767 || ||| || || || || | ||||| |||||||| || || || || ||| | ||| Sbjct 552 GGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATG 611 Query 41768 CATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATG 41827 ||||| || || || || || || || || |||||||| || || || ||| ||| Sbjct 612 CATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATG 671 Query 41828 CACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAAC 41887 || ||| | || || || ||||| || || || | | ||| || | || Sbjct 672 CATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACTGCAGGAGATATTAGCCTAAAT 731 Query 41888 TATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTAT 41947 ||| || |||||||||||||| || || ||||| | || || || || || ||| Sbjct 732 GTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTAT 791 Query 41948 TTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTT 42007 |||||| | || || || ||||||||| ||| ||||| || ||||||||||| ||||| Sbjct 792 TTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTC 851 Query 42008 CTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCT 42067 || || || ||||| ||| | || |||||||| | || ||||| || ||| |||||| Sbjct 852 CTAGCAGCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCT 911 >seq75038 Length=481 Score = 251 bits (278), Expect = 2e-62 Identities = 343/479 (72%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 41594 CTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCT 41653 ||||| ||| | || ||||| ||| || || || | ||| || || ||||||||||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 41654 GTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATA 41713 || || | |||| || |||| || || || ||||| |||| ||||| || || || Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 41714 TCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCT 41773 || || || ||||| | ||| | || ||||| || ||||| |||||| | ||||||||| Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 41774 TTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833 ||||| ||| | ||||| || || || |||||||| || || ||||||||||| ||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 41834 AGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGT 41893 |||| || || ||| | |||||||| || |||||| | | ||| || |||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 41894 TACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGT 41953 || | || || ||||| ||||| || || || ||||| || || || || ||||||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 41954 CGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCT 42013 || | || |||||||||||| || ||||| || || | | |||||||| | ||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 42014 GCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 |||||||| || || |||||||| || | | || | || || ||||| || || Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 219 bits (242), Expect = 1e-52 Identities = 294/409 (72%), Gaps = 0/409 (0%) Strand=Plus/Plus Query 41664 TTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCT 41723 |||| || |||| || || || ||||| |||| ||||| || || || || || || | Sbjct 16 TTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTT 75 Query 41724 TCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGC 41783 |||| | ||| | || ||||| || ||||| |||||| | |||||||||||||| ||| Sbjct 76 TCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGT 135 Query 41784 TGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCA 41843 | ||||| || || || |||||||| || || ||||||||||| ||| |||| | Sbjct 136 TAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTA 195 Query 41844 CGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTG 41903 | || ||| | |||||||| || |||||| | | ||| || |||||| | || | Sbjct 196 CTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCG 255 Query 41904 GTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCT 41963 | ||||| ||||| || || || ||||| || || || || ||||||||||| | || | Sbjct 256 GACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTT 315 Query 41964 TCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTG 42023 ||||||||||| || ||||| || || | | |||||||| | ||| ||||||| Sbjct 316 TCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTG 375 Query 42024 TTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 | || || |||||||| || | | || | || || ||||| || || Sbjct 376 TAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 424 >seq174640 Length=289 Score = 172 bits (190), Expect = 2e-38 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41890 TGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTT 41949 ||| || |||||||||||||| || || ||||| | || || || || || ||||| Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 41950 TGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCT 42009 |||| | || || || ||||||||| ||| ||||| || ||||||||||| ||||| || Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 42010 TGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTT 42069 || || ||||| ||| | ||||||||||| | || ||||| || ||| |||||||| Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 42070 CAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAG 42107 |||||| |||||||| ||||| |||||||| | |||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAG 39 >seq75039 Length=421 Score = 149 bits (164), Expect = 2e-31 Identities = 248/356 (70%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 41259 ATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTA 41318 ||||||| | ||| | || ||||| ||||| |||||||| | | | |||| Sbjct 356 ATAACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTA 297 Query 41319 CAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAG 41378 | || |||||||| || ||||||| ||||| || || || || |||||||| || | Sbjct 296 CCTCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTG 237 Query 41379 AACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGA 41438 |||| || |||| || | || ||||| ||||| || || |||| || | |||| | Sbjct 236 AACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTA 177 Query 41439 GCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAAT 41498 || || || || |||| || || |||||||||||||||||| | | ||||||| Sbjct 176 CTTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAAT 117 Query 41499 GGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TT 41557 |||| || || || || || | ||| | | || | |||||| || | || | | || Sbjct 116 GGCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTT 57 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 || || |||||||| || ||||||||| | ||| ||||| ||| | || ||||| Sbjct 56 GC-TATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 140 bits (154), Expect = 9e-29 Identities = 228/326 (70%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 41259 ATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCCGCTA 41318 ||||||| | ||| | || ||||| ||||| |||||||| | | | |||| Sbjct 154 ATAACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTA 213 Query 41319 CAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAG 41378 | || |||||||| || ||||||| ||||| || ||||| || |||||||| || | Sbjct 214 CCTCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTG 273 Query 41379 AACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGA 41438 |||| || |||| || | || ||||| ||||| || || |||| || | |||| | Sbjct 274 AACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTA 333 Query 41439 GCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAAT 41498 || || || || |||| || || |||||||||||||||||| | | ||||||| Sbjct 334 CTTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAAT 393 Query 41499 GGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TT 41557 |||| || || || || || | ||| | | || | |||||| || | || | | || Sbjct 394 GGCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTT 453 Query 41558 GCTTACATGGGACGAGAGTGGGAACT 41583 || || |||||||| || |||||||| Sbjct 454 GC-TATATGGGACGTGAATGGGAACT 478 >seq251946 Length=233 Score = 107 bits (118), Expect = 6e-19 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| || ||||||||||||||||| | | ||||||||| | || || || || || Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | || | | || | || || | | || |||| | ||| || || || |||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 ||||| || ||||| |||| ||| | || ||||||| |||||| | | | || ||||| Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGG 41682 || || || | || || || ||||| ||||| |||| || || Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145775068495712