Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq174639 342 1e-89 seq75038 291 2e-74 seq12672 269 8e-68 seq75039 187 7e-43 seq174640 168 2e-37 seq25321 165 2e-36 seq174641 163 8e-36 >seq174639 Length=919 Score = 342 bits (378), Expect = 1e-89 Identities = 566/810 (70%), Gaps = 8/810 (1%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACC 42375 || ||||| || ||||||| |||||| | || ||| |||||| | | | || || | Sbjct 105 AATCGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCCCTCTTT--TAACTT-TAGC 160 Query 42376 ACCTGTT--TTAT-TGTC-GCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCG 42431 | || || |||| | | ||||| ||| ||| ||| | ||||| |||||||| || | Sbjct 161 AACTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAG 220 Query 42432 TGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCC 42491 ||||| || ||||||| ||||| |||||||| ||||| || | || || || | || Sbjct 221 AGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACC 280 Query 42492 TAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGA 42551 || ||| || ||||| | ||||| ||| | | ||||| | ||| |||| || Sbjct 281 AAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGA 340 Query 42552 ATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTT 42611 || | || ||||| || | ||||| | || || | || || | | ||| | Sbjct 341 GTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTTGC 400 Query 42612 CTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTT 42671 | || |||| | ||||||||| | | | || | || ||||| || ||||| || Sbjct 401 TTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATT 460 Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 ||| |||| ||| || ||||| | ||||| |||||| || |||| |||||| |||| Sbjct 461 TGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGG 520 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTT 42791 |||| | ||||| |||||||||||| | || || || || || || || ||| | Sbjct 521 TCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCT 580 Query 42792 GGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 || ||||| || |||||||||||| | |||||||| |||||||| || || || || || Sbjct 581 TGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGG 640 Query 42852 CGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGT 42911 |||||||| || || || || || ||||||||| | || || ||||| ||| | Sbjct 641 TGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCT 700 Query 42912 GCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGA 42971 ||||| | | | | |||| |||| ||| || ||||| |||||||| || || Sbjct 701 TGCAGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGA 760 Query 42972 GACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTC 43031 ||||||| ||| ||||| |||||||| ||||| | || || || |||||||| || Sbjct 761 AACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTC 820 Query 43032 GTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTG 43091 || ||||| ||| | | |||||||| || || |||||||| ||| | |||||||| Sbjct 821 CTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTG 880 Query 43092 GTTCACTTCTCTTGGCGTCAGTACTATGGC 43121 |||||| | ||||| || ||||| ||||| Sbjct 881 GTTCACAGCACTTGGAGTAAGTACAATGGC 910 >seq75038 Length=481 Score = 291 bits (322), Expect = 2e-74 Identities = 352/479 (73%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 42649 CTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCA 42708 || || ||| | || ||||| ||| ||||| || | || || || || |||||||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 42709 GTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATT 42768 || || | | || ||| |||| ||||| || ||||| |||||||||||| | || ||| Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 42769 TCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCT 42828 || || || ||||| || ||| | || ||||| || || ||||| ||| | ||||||||| Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 42829 TTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 || |||||| | ||||| || || || |||||||| || || || || |||||||||||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 42889 AGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGC 42948 | || || || || | | |||||||| |||||||| ||| |||| ||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 42949 TACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGA 43008 || | ||||| ||||| || || || ||||||||||| ||||| |||||||| ||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 43009 CGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCC 43068 || | || ||||||||||| || || ||||| |||||||| || ||||| | || Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 43069 GCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127 |||||| || || || ||||||||||||||| | || | || ||||| ||||| Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 269 bits (298), Expect = 8e-68 Identities = 304/407 (75%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 42721 TATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTC 42780 || ||| |||| ||||| || ||||| |||||||||||| | || ||||| || || ||| Sbjct 18 TACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTC 77 Query 42781 AACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTT 42840 || || ||| | || ||||| || || ||||| ||| | ||||||||||| |||||| | Sbjct 78 AATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTA 137 Query 42841 GGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACC 42900 ||||| || || || |||||||| || || || || |||||||||||| | || || Sbjct 138 GGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACT 197 Query 42901 TCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGT 42960 || || | | |||||||| |||||||| ||| |||| ||| || | ||||| Sbjct 198 TCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCGGA 257 Query 42961 CAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTC 43020 ||||| || || || ||||||||||| ||||| |||||||| ||||| || | || ||| Sbjct 258 CAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTC 317 Query 43021 CAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTT 43080 |||||||| || || ||||| |||||||| || ||||| | || |||||| || Sbjct 318 CAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTA 377 Query 43081 GTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127 || || ||||||||||||||| | || | || ||||| ||||| Sbjct 378 GTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 424 >seq75039 Length=421 Score = 187 bits (206), Expect = 7e-43 Identities = 277/390 (71%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||| || | ||||| | ||| |||| |||||| Sbjct 390 TGGGCTCGCTTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTT 331 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 || || |||||||| | | | | |||||| | ||| |||||| | ||||| | Sbjct 330 GGAGTTTGCATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGT 272 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| || | | || Sbjct 271 TGCTGCACCTCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATA 212 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || | || || | | |||| ||||||||||| ||||||| Sbjct 211 TGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTT 152 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| | || |||||||| | | | || |||||||| || ||||| ||||||||||| Sbjct 151 TTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCA 92 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | | || | |||||| | | || || | | || ||||||| ||||||||||| Sbjct 91 ATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 32 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 ||||| || || || ||| | || ||||| Sbjct 31 TTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq174640 Length=289 Score = 168 bits (186), Expect = 2e-37 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 42934 AGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCG 42993 |||| |||| ||| || ||||| |||||||| || || ||||||| ||| ||||| Sbjct 267 AGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCC 208 Query 42994 CATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTG 43053 |||||||| ||||| | || || || |||||||| || || ||||| ||| | | Sbjct 207 CATGGTTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTT 148 Query 43054 CACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGT 43113 |||||||| || || |||||||| ||| | || ||||||||||| | ||||| || ||| Sbjct 147 CACTTCTTCCTAGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGT 88 Query 43114 ACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATC 43154 || ||||| || ||||| |||||||| ||||| |||||||| Sbjct 87 ACAATGGCTTTCAACTTAAATGGTTTAAACTTCAACCAATC 47 >seq25321 Length=478 Score = 165 bits (182), Expect = 2e-36 Identities = 254/360 (71%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | ||| || | ||||| | ||| |||| |||||| Sbjct 120 TGGGCTCGCTTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTT 179 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 || || |||||||| | | | | |||||| | ||| |||||| | ||||| | Sbjct 180 GGAGTTTGCATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGT 238 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| || || |||||||| |||||||||||||| ||||| || | | || Sbjct 239 TGCTGCACCTCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATA 298 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || | || || | | |||| ||||||||||| ||||||| Sbjct 299 TGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTT 358 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 ||| | || |||||||| | | | || |||||||| || ||||| ||||||||||| Sbjct 359 TTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCA 418 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 | | || | |||||| | | || || | | || ||||||| ||||||||||| Sbjct 419 ATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq174641 Length=312 Score = 163 bits (180), Expect = 8e-36 Identities = 210/290 (72%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 42620 TGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTT 42679 |||| | ||||||||| | | | || | || ||||| || ||||| ||||| |||| Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 42680 ACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTT 42739 ||| || ||||| | ||||| |||||| || |||| |||||| |||| |||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 42740 CTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCC 42799 ||||| |||||||||||| | || || || || || || || ||| | || |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 42800 AGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTG 42859 | || |||||||||||| | |||||||| |||||||| || || || || || ||||||| Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 42860 GTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTT 42909 | || || || || || ||||||||| | || || ||||| ||| Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143101525919344