Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq174639 264 3e-66 seq75038 251 2e-62 seq12672 239 1e-58 seq75039 178 4e-40 seq174641 174 5e-39 seq25321 167 7e-37 seq174640 118 3e-22 >seq174639 Length=919 Score = 264 bits (292), Expect = 3e-66 Identities = 495/724 (68%), Gaps = 10/724 (1%) Strand=Plus/Minus Query 26027 GCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGA 26086 |||||||| | | || | | ||| | ||| || |||| ||| ||||||| || || Sbjct 910 GCCATTGTACTTACTCCAAGTGCTGTGAACCAAATCCCAATAACTGGCCAAGCTGCTAGG 851 Query 26087 AAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAG 26146 ||||| |||||| ||| |||||| || ||||| ||||| || | ||| ||||| Sbjct 850 AAGAAGTGAAGACTACGAGAGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAA 791 Query 26147 TACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAA 26206 || || || || || || |||| || || || ||||| ||||||||||| ||| | Sbjct 790 TAACCATGGGCTGCTGATATGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCAACA 731 Query 26207 TTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGC 26266 || | | || ||| |||||||||| |||||| || ||||| || || ||| Sbjct 730 TTTAGGCTAATATCTCCTGCAGTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATGC 671 Query 26267 ATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGC 26326 || ||| || | | || || || || ||||| || || ||||||||||| ||| Sbjct 670 ATTGCACTAAATAATGAACCTCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGC 611 Query 26327 ATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 26386 || | || ||||||||||||||||| || | |||||| |||||||| ||| || || Sbjct 610 ATTAAAATGTTATGTTCTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCT 551 Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446 | |||||||||||| ||| || |||| || | |||||||| | || ||||| | | Sbjct 550 AAAGGCATTCCATCGGAAAAGCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAA 491 Query 26447 GCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAA 26506 ||||| | ||||||| | || |||||||||||||||||||| |||| |||| || Sbjct 490 GCTGCTACAACAGGTGCTGAGAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAA 431 Query 26507 GATAGTTCCCACTGTCTCCCTGCAT--ATGCTGCTACTCCTATTAAGAAGTGGAAGATAA 26564 | |||||| | ||| || ||| | || || || | | || || | | | Sbjct 430 CTGAATTCCCATTCTCTACC--CATCCAACAAGCAACACCAAGCATAAAATGAAGTACTA 373 Query 26565 TGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCA---GCTTCCCAGA 26621 | |||||||| || ||||| |||| ||||| || | | ||| | ||||| | Sbjct 372 CAAATTGATATGTACCACCATTATATAAGCACTCATCAAAT---CCATTTGACTCCCAAA 316 Query 26622 TCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATAT 26681 || || ||||| | || || || ||||| || | || ||||||| ||| || | Sbjct 315 CTGGATAGAAATGAACCCCAATAGCATTAGAACTTGGTATTACAGCTCCTGTTATAATGT 256 Query 26682 TGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCG 26741 | || || || | | ||||| | ||||| || | ||| ||||| |||||||| | | Sbjct 255 TATTGCCATAAAGAAGTGAGCCAGCTACTGGTTCTCTTATTCCATCAATATCTACTGCAG 196 Query 26742 GTGC 26745 |||| Sbjct 195 GTGC 192 >seq75038 Length=481 Score = 251 bits (278), Expect = 2e-62 Identities = 343/479 (72%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 26021 TTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTA 26080 |||||||||||||| | || || | ||| || | ||| || ||||| || |||||| || Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 26081 GCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTC 26140 || | |||||||| | ||| || |||||| ||| ||||| || |||||||| | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 26141 CCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAG 26200 ||||| || || ||||| || ||||| |||||||| ||||| ||||| || || |||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 26201 CCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTT 26260 ||| ||| ||| | | || || ||||| ||| | ||| ||||||||||| Sbjct 181 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 240 Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || |||||||||| || | | ||||| || || ||||| ||||| |||||| || Sbjct 241 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 300 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 || ||||| | |||||||| ||||||||||| || | |||||| || ||||| || || Sbjct 301 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 360 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440 || || | |||||||||||| ||| ||||| || | || |||| ||| || || Sbjct 361 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 420 Query 26441 GCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAG 26499 || || || | | ||| ||| ||| || ||| ||||| || | ||||||||| Sbjct 421 GCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAG 479 >seq12672 Length=424 Score = 239 bits (264), Expect = 1e-58 Identities = 306/422 (73%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 26021 TTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTA 26080 |||||||||||||| | || || | ||| || | ||| || ||||| || |||||| || Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 26081 GCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTC 26140 || | |||||||| | ||| || |||||| ||| ||||| || |||||||| | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 26141 CCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAG 26200 ||||| || || ||||| || ||||| |||||||| ||||| ||||| || || |||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 26201 CCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTT 26260 ||| ||| ||| | | || || ||||| ||| | ||| ||||||||||| Sbjct 244 CCAGCATTTGTTGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGAA 185 Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || |||||||||| || | | ||||| || || ||||| ||||| |||||| || Sbjct 184 CCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAAA 125 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 || ||||| | |||||||| ||||||||||| || | |||||| || ||||| || || Sbjct 124 GGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGAA 65 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440 || || | |||||||||||| ||| ||||| || | || |||| ||| || || Sbjct 64 ATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATACC 5 Query 26441 GC 26442 || Sbjct 4 GC 3 >seq75039 Length=421 Score = 178 bits (196), Expect = 4e-40 Identities = 273/383 (71%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 26480 ATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GCTGC 26538 ||||| || | ||||||||| | | || |||||||| | | || ||||| || | Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCC--CATATAGCAAC 59 Query 26539 TACT-CCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACT 26597 | | |||| || |||||| | | ||| | |||||| ||||| ||||| |||||||| | Sbjct 60 AAATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATT 119 Query 26598 CGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGG 26657 | || | | |||||||||| || || |||||||||| || |||||||| || | | Sbjct 120 CATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAG 179 Query 26658 GGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCAC 26717 | | | || |||| || ||||||||||| || | ||| || || ||||| || |||| Sbjct 180 GAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCAC 239 Query 26718 GTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTG 26776 | || ||||| |||||||| || ||||| || | || |||| ||||| ||| | || Sbjct 240 GAATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACA-GAGGTA 298 Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836 |||| | ||| || ||||| || || ||||| || | ||| | ||||| || Sbjct 299 GCTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCT 358 Query 26837 GTACTTGTAACCCACTCACAAAA 26859 ||||| |||| ||| |||||||| Sbjct 359 GTACTAGTAATCCATTCACAAAA 381 >seq174641 Length=312 Score = 174 bits (192), Expect = 5e-39 Identities = 218/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 26228 GTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCA 26287 |||||||||| |||||| || ||||| || || ||||| ||| || | | || Sbjct 12 GTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATGAACCT 71 Query 26288 CCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCT 26347 || || || ||||| || || ||||||||||| ||||| | || |||||||||||| Sbjct 72 CCAAATACACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTTCTGCT 131 Query 26348 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAA 26407 ||||| || | |||||| |||||||| ||| || || | |||||||||||| ||| Sbjct 132 TGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGGAAAAG 191 Query 26408 CTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTA 26467 || |||| || | |||||||| | || ||||| | |||||| | ||||||| Sbjct 192 CTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGGTGCTGAG 251 Query 26468 TATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCC 26526 | || |||||||||||||||||||| |||| |||| || | |||||| | ||| || Sbjct 252 AAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAACTGAATTCCCATTCTCTACC 310 >seq25321 Length=478 Score = 167 bits (184), Expect = 7e-37 Identities = 230/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 26542 TCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTC 26601 ||||| || |||||| | | ||| | |||||| ||||| ||||| |||||||| || || Sbjct 446 TCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCATC 387 Query 26602 CAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGAC 26661 | | |||||||||| || || |||||||||| || |||||||| || | || | Sbjct 386 TAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGAAT 327 Query 26662 GACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTAT 26721 | || |||| || ||||||||||| || | ||| || || ||||| || ||||| || Sbjct 326 AATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGAAT 267 Query 26722 GCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG 26780 ||||| ||||| || || ||||| || | || |||| ||||| ||| | || |||| Sbjct 266 TCCATCAATATCAACTGGAGGTGCAGCAACAAAAGCAATAATAAATACA-GAGGTAGCTG 208 Query 26781 CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTAC 26840 | ||| || ||||| || || ||||| || | ||| | ||||| || |||| Sbjct 207 TTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTGTAC 148 Query 26841 TTGTAACCCACTCACAAAA 26859 | |||| ||| |||||||| Sbjct 147 TAGTAATCCATTCACAAAA 129 >seq174640 Length=289 Score = 118 bits (130), Expect = 3e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||| |||||||||| ||| || |||||||| | | || | | ||| Sbjct 47 GATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAAGTGCTGTG 106 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || |||| ||| ||||||| || || ||||| |||||| ||| |||||| Sbjct 107 AACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTATTG 166 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 || ||||| ||||| || | ||| ||||| || || || || || || |||| Sbjct 167 AAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTATAA 226 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCA 26203 || || || ||||| ||||||||||| ||| Sbjct 227 GTTTCATCTTCTTGACCAAACTTATATCCA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147268168645760