Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq174639 298 6e-76 seq75038 295 8e-75 seq12672 269 3e-67 seq75039 187 3e-42 seq25321 163 3e-35 seq174641 158 1e-33 seq174640 132 6e-26 >seq174639 Length=919 Score = 298 bits (330), Expect = 6e-76 Identities = 486/697 (70%), Gaps = 16/697 (2%) Strand=Plus/Plus Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || || ||| ||||||| | ||||| |||||||| || | ||||| || ||||| || Sbjct 180 GCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCA 239 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 | | ||||| || ||||| || | || ||||| | || ||||| || || ||||| Sbjct 240 CTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGG 299 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | || |||||||| ||||||| || |||||||||| || || ||||||||| Sbjct 300 GTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGT 359 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 155307 | | ||| ||||||| | || || | | || | || | || ||| | Sbjct 360 ACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTT---GCTTGTTGGATGGGTAGA 416 Query 155308 CAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 155367 | |||||| | || | | | || ||| | || ||||| | ||| || | ||| ||| Sbjct 417 GAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCA 476 Query 155368 CCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCT 155427 || || || || || || ||||| |||||||||| | ||||||| | || || Sbjct 477 CCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCC 536 Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 |||| |||||| | || || ||| |||||||| | |||| | ||||||||||||||| Sbjct 537 GATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAA 596 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCT 155547 || || || | ||||| || ||||| || || |||||||| ||||| || || || || Sbjct 597 CATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCA 656 Query 155548 CTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAG 155607 | || ||| ||||| |||||||| || ||||||||||| | |||||| | Sbjct 657 TTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACT-----G 711 Query 155608 CAAGAG-TCTCAG----AACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACA 155662 || ||| | | || || ||| || ||||| || |||||||| |||||||||| || Sbjct 712 CAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCA 771 Query 155663 TTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACT 155722 | || || ||||| || || ||| | || || || || ||||| |||||||| |||| Sbjct 772 TATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACT 831 Query 155723 CAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGT 155759 | | ||||||||||||||||| || || ||||| || Sbjct 832 CTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGT 868 >seq75038 Length=481 Score = 295 bits (326), Expect = 8e-75 Identities = 354/481 (74%), Gaps = 0/481 (0%) Strand=Plus/Minus Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || ||||| |||||||| ||| || || || | ||||| | |||||| | Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 | ||||| | |||| || | |||||||| || || || |||| |||||| | || | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | || || ||||| || | |||| | || ||||||||||| || ||||| | ||||| | Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || || ||| | || ||||| |||||||| ||||| || | || ||||||||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||||||||| || || ||| |||| |||||||| ||||| | || || || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||| | |||||||||||||||||||| ||||||||||| || || ||||| || || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 ||||| | || ||||| ||||| || ||||| |||||| | | | || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 || |||||||| || | || ||| ||| || | || | ||||| |||||||| | Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 155807 A 155807 | Sbjct 1 A 1 >seq12672 Length=424 Score = 269 bits (298), Expect = 3e-67 Identities = 313/422 (74%), Gaps = 0/422 (0%) Strand=Plus/Plus Query 155386 GCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGT 155445 || ||||| | |||| || | |||||||| || || || |||| |||||| | || Sbjct 3 GCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGA 62 Query 155446 ATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 || || || ||||| || | |||| | || ||||||||||| || ||||| | ||||| Sbjct 63 ATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCAT 122 Query 155506 CCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCAC 155565 || || || ||| | || ||||| |||||||| ||||| || | || ||||||||||| Sbjct 123 CCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCAT 182 Query 155566 GGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTAT 155625 ||||||||||| || || ||| |||| |||||||| ||||| | || || || | Sbjct 183 GGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCT 242 Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||| | |||||||||||||||||||| ||||||||||| || || ||||| || || Sbjct 243 GGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTT 302 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745 |||||| | || ||||| ||||| || ||||| |||||| | | | || |||||| | Sbjct 303 GGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTA 362 Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 ||| |||||||| || | || ||| ||| || | || | ||||| |||||||| Sbjct 363 GCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTT 422 Query 155806 AA 155807 || Sbjct 423 AA 424 >seq75039 Length=421 Score = 187 bits (206), Expect = 3e-42 Identities = 218/289 (75%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| | || || ||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 288 TTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGAACCTGTT 229 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 ||||||| ||| | ||||| ||||| || || | || ||| || | |||| ||||||| Sbjct 228 TCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAAC 169 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 ||||||||| | || || ||||| ||||||||||| || || | ||||| ||| | || Sbjct 168 GCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATAT 109 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAA-TCACAGC-ATACT 155299 |||||||| |||| ||| | | || | |||||| | | |||| | || ||| | Sbjct 108 AATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTGCTATA-T 50 Query 155300 GTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGAT 155348 | || ||| | ||||||||||| | ||||| || ||||| |||||||| Sbjct 49 G-GGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| | || || ||||||||||||| || || |||||||| ||||||||||| || Sbjct 222 TTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTGAACCTGTT 281 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 ||||||| ||| | ||||| ||||| || || | || ||| || | |||| ||||||| Sbjct 282 TCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTACTTCAAAC 341 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 ||||||||| | || || ||||| ||||||||||| || || | ||||| ||| | || Sbjct 342 GCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATAT 401 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTT 155276 |||||||| |||| ||| | | || | |||||| Sbjct 402 AATGGTGGACCTTATCAATTAATTGTTTGCCACTT 436 >seq174641 Length=312 Score = 158 bits (174), Expect = 1e-33 Identities = 189/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTA 155391 || ||| | || ||||| | ||| || | ||| ||||| || || || || || ||| Sbjct 280 GGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTA 221 Query 155392 TTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCT 155451 || |||||||||| | ||||||| | || || |||| |||||| | || || | Sbjct 220 TTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGT 161 Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 || |||||||| | |||| | ||||||||||||||||| || || | ||||| || ||| Sbjct 160 GGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTC 101 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCA 155571 || || || |||||||| ||||| || || || || | || ||| ||||| |||||| Sbjct 100 CATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCA 41 Query 155572 TTGGTGACATCTTCACT 155588 || || ||||||||||| Sbjct 40 TTAGTTACATCTTCACT 24 >seq174640 Length=289 Score = 132 bits (146), Expect = 6e-26 Identities = 183/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 155625 TGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTT 155684 ||| || ||||| || |||||||| |||||||||| ||| || || ||||| || || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 155685 CGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 155744 ||| | || || || || ||||| |||||||| ||||| | ||||||||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 155745 TGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATT 155804 || || ||||| || | | || ||| || || | || || || ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 155805 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCC 155864 |||| | || ||||| ||||||||||| || | |||| | ||||| | | ||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGATTCCAGTGGCCATCTAATCTT 17 Query 155865 TACATGGGCAGACATT 155880 | |||||||| ||| Sbjct 16 AAGTTGGGCAGATATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582985453987680