Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020877.1 Length=131332 Score E Sequences producing significant alignments: (Bits) Value seq2714 174 1e-38 seq246949 140 3e-28 seq252629 86.0 5e-12 >seq2714 Length=540 Score = 174 bits (192), Expect = 1e-38 Identities = 331/487 (68%), Gaps = 3/487 (1%) Strand=Plus/Minus Query 125399 TTATAGTTAGCTAAATTAATACTAGCATTAAGGTCTCTATCAATACTAAAACCACATTTA 125458 ||||| || | | ||| ||||||||||| || ||||| ||| | | ||||| | Sbjct 489 TTATATTTTGAAAGATTTATACTAGCATTTTTATCCCTATCCATAATCATTTTACATTCA 430 Query 125459 ---CATTTAAATACTCTGTCTGATAGTTTTAGGTTTTTATGGATACTACCACATGTAGAA 125515 |||||| || || || |||||||| | ||| | | | | ||||| |||| Sbjct 429 TCACATTTATATTTCCTATCACTTAGTTTTAAATCTTTTTTTACATTTCCACAACAAGAA 370 Query 125516 CATGTTTTACTAGAAGGGAAAAATCTATCTACAATAACAAGTTCAATTCCTTGTCTTTCA 125575 ||| |||||||| || |||||||||| | |||||| || |||| | ||| Sbjct 369 CATCTTTTACTACTTGGATAAAATCTATCAGCTTTAACAAATTTAATTTTATTAAATTCG 310 Query 125576 CATTTGTATTCTAATTGCCTTCTAAACTCATAAAATCCTTGTTTTTGTATTGCTTTAGCT 125635 ||||| |||| | ||| ||| |||| ||||||||| ||||| ||| || ||| | | Sbjct 309 CATTTATATTTCATTTGTCTTATAAATTCATAAAATTTTTGTTCTTGAATACTTTTTGAT 250 Query 125636 AAATGTCTATTCTTCATCATCCCTTTTACATTCAAATCTTCAATAACAATTCTTCTAGGT 125695 ||||| |||| |||||||| || ||| ||| |||||||| || || | ||| ||| Sbjct 249 AAATGCTTATTTTTCATCATGCCACTTATATTTAAATCTTCCATCACCACTCTATATGGT 190 Query 125696 TTGGTTTTCACGATAGAAGATGTTACTTGATGTAAATAGTTTTTACGAATATTAGACAAT 125755 || ||| | || || ||||||||||||| || || || | ||||| | | Sbjct 189 TTTAATTTAATTATTTTAGCAGTTACTTGATGTATATGATTATTTCTTATATTTGCTAGC 130 Query 125756 CTTCGTTGTAGGAGTTTAATTTGTTTTTCTAGTTTTATGATATTGCAAGTTTTGACAAAC 125815 ||| || | ||||||||||||||||||| ||| || ||||| |||||| | ||| Sbjct 129 TTTCTATGAATAAGTTTAATTTGTTTTTCTAATTTAATAATATTATTAGTTTTTATAAAA 70 Query 125816 GTACTCCCTTCTTTAtttttttGGTATTTGAAAGATACCTTACGTTGCAACCTACGTAAT 125875 | | |||| |||||| ||| ||||| |||| || | ||| || ||| | | Sbjct 69 CAATTTCCTTGTTTATTCATTTTATATTTTTTTGATATTTTTCTTTGTAATCTATCCAGT 10 Query 125876 CGTTTTT 125882 | ||||| Sbjct 9 CTTTTTT 3 Score = 102 bits (112), Expect = 7e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 10398 GATTACAAAAACAGGTTTTTAGAAAATATGACATGAATAAACAAGGTAATAAATATGTTA 10457 ||||||||| | | | | | ||||||| | |||||||||||||| ||| | | | | Sbjct 18 GATTACAAAGAAAAATATCAAAAAAATATAAAATGAATAAACAAGGAAATTGTTTTATAA 77 Query 10458 AAACTAAAAATATTATTAAGTTAGAACGTAAAATAAGACACATAAGAAGAAAACTTAAAA 10517 ||||||| ||||||||||| |||||| |||| | || || ||||| || || Sbjct 78 AAACTAATAATATTATTAAATTAGAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAA 137 Query 10518 GTATAAGAAATAATCATATACACACAGAAACTaaaaaaaTAGTTGAAATGTTACCGAAAG 10577 ||||||||||||||||||||| || |||| |||||| || || | ||| | Sbjct 138 ATATAAGAAATAATCATATACATCAAGTAACTGCTAAAATAATTAAATTAAAACCATATA 197 Query 10578 AAATAGTTATAGAAGATTTACATGTTAAAGAAATGTTAAAAGATAA 10623 | | || || ||||||||| || | | | ||| | ||| |||| Sbjct 198 GAGTGGTGATGGAAGATTTAAATATAAGTGGCATGATGAAAAATAA 243 >seq246949 Length=325 Score = 140 bits (154), Expect = 3e-28 Identities = 217/310 (70%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 125535 AAAATCTATCTACAATAACAAGTTCAATTCCTTGTCTTTCACATTTGTATTCTAATTGCC 125594 |||||||||| | |||||| || |||| | ||| ||||| |||| | ||| | Sbjct 7 AAAATCTATCAGCTTTAACAAATTTAATTTTATTAAATTCGCATTTATATTTCATTTGTC 66 Query 125595 TTCTAAACTCATAAAATCCTTGTTTTTGTATTGCTTTAGCTAAATGTCTATTCTTCATCA 125654 || |||| ||||||||| ||||| ||| || ||| | |||||| |||| ||||||| Sbjct 67 TTATAAATTCATAAAATTTTTGTTCTTGAATACTTTTTGATAAATGCTTATTTTTCATCA 126 Query 125655 TCCCTTTTACATTCAAATCTTCAATAACAATTCTTCTAGGTTTGGTTTTCACGATAGAAG 125714 | || ||| ||| |||||||| || || | ||| ||||| ||| | || || Sbjct 127 TGCCACTTATATTTAAATCTTCCATCACCACTCTATATGGTTTTAATTTAATTATTTTAG 186 Query 125715 ATGTTACTTGATGTAAATAGTTTTTACGAATATTAGACAATCTTCGTTGTAGGAGTTTAA 125774 ||||||||||||| || || || | ||||| | | ||| || | ||||||| Sbjct 187 CAGTTACTTGATGTATATGATTATTTCTTATATTTGCTAGCTTTCTATGAATAAGTTTAA 246 Query 125775 TTTGTTTTTCTAGTTTTATGATATTGCAAGTTTTGACAAACGTACTCCCTTCTTTAtttt 125834 |||||||||||| ||| || ||||| |||||| | ||| | | |||| |||||| Sbjct 247 TTTGTTTTTCTAATTTAATAATATTATTAGTTTTTATAAAACAATTTCCTTGTTTATTCA 306 Query 125835 tttGGTATTT 125844 ||| ||||| Sbjct 307 TTTTATATTT 316 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 10420 AAAATATGACATGAATAAACAAGGTAATAAATATGTTAAAACTAAAAATATTATTAAGTT 10479 ||||||| | |||||||||||||| ||| | | | |||||||| ||||||||||| || Sbjct 317 AAAATATAAAATGAATAAACAAGGAAATTGTTTTATAAAAACTAATAATATTATTAAATT 258 Query 10480 AGAACGTAAAATAAGACACATAAGAAGAAAACTTAAAAGTATAAGAAATAATCATATACA 10539 |||| |||| | || || ||||| || || ||||||||||||||||||||| Sbjct 257 AGAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAAATATAAGAAATAATCATATACA 198 Query 10540 CACAGAAACTaaaaaaaTAGTTGAAATGTTACCGAAAGAAATAGTTATAGAAGATTTACA 10599 || |||| |||||| || || | ||| | | | || || ||||||||| | Sbjct 197 TCAAGTAACTGCTAAAATAATTAAATTAAAACCATATAGAGTGGTGATGGAAGATTTAAA 138 Query 10600 TGTTAAAGAAATGTTAAAAGATAA 10623 | | | | ||| | ||| |||| Sbjct 137 TATAAGTGGCATGATGAAAAATAA 114 >seq252629 Length=245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/128 (76%), Gaps = 8/128 (6%) Strand=Plus/Minus Query 21783 AATACCTTAAATTGCTAGAACACCGTAAAGCTAACTAAACTACAAAGTAAGTC-GAAAGA 21841 ||| | || || |||| ||| || ||||||||||||||| |||| | | |||| | Sbjct 146 AATCCTTTGAACTGCTGGAAACCCTTAAAGCTAACTAAACCACAACATGACCATGAAATA 87 Query 21842 CTAGGCT-----TGAATGTTGAGAAATCAGAAAAAATTAGTTAGATGGTATAAGGTTAAA 21896 ||| | ||| |||| |||| |||||||||||||||||||| ||||||||||| Sbjct 86 --AGGGTGAGTGTGATGGTTGCGAAAGTAGAAAAAATTAGTTAGATGGCATAAGGTTAAA 29 Query 21897 TCCTAAGT 21904 |||||||| Sbjct 28 TCCTAAGT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418841988597044