Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq174639 340 5e-89 seq75038 255 2e-63 seq12672 242 1e-59 seq174641 212 2e-50 seq75039 201 3e-47 seq25321 194 5e-45 seq174640 147 6e-31 >seq174639 Length=919 Score = 340 bits (376), Expect = 5e-89 Identities = 554/785 (71%), Gaps = 16/785 (2%) Strand=Plus/Minus Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || |||||||| || |||| | || |||||||| || ||| || ||||| Sbjct 881 CCAAATCCCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTATTGAA 822 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 ||||||||||||||||| ||||||||||| ||||| || || ||| ||| ||||||| Sbjct 821 GGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTATAAGT 762 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCC-GTGGTCTCCC 40890 || |||| |||||||||||||| || || | | | | ||| | || || Sbjct 761 TTCATCTTCTTGACCAAACTTATATCCAACATTTAG-GCTAATATCTCCTGCAGTTTCTG 703 Query 40891 GAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGA 40950 || | ||| || ||||| | || ||||| ||| ||| || | ||| ||||| | Sbjct 702 CAAGAAGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATGAACCTCCAAATA 643 Query 40951 CGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGA 41010 | || || || || || ||||||||||| ||||| | |||||| |||||||||||||| | Sbjct 642 CACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTTCTGCTTGGAACA 583 Query 41011 CAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCT 41070 ||| ||| || || || |||||||| |||||||||||||| ||||| || || | | | Sbjct 582 CAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGGAAAAGCTAGCTT 523 Query 41071 GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAAT-GGAGCTGTGTATGCC 41129 |||| | ||||||||| | ||||| || | ||||||| |||| || |||| | | || Sbjct 522 GACCAATTGGATAAACAACAAATACTGCAAAAGCTGCT-ACAACAGGTGCTGAGAAAGCT 464 Query 41130 ACAAATATCCATGGTCTCATACCTAGTCTGTA--TGAAAGTTCCCACTGTCTACCAGCGT 41187 ||||||||||||||||||||||||| |||| | |||| |||||| | |||||| Sbjct 463 ACAAATATCCATGGTCTCATACCTAATCTGAAACTGAA--TTCCCATTCTCTACCCATCC 406 Query 41188 ATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATA 41247 | || || || | | ||| |||| || | | |||||||| || || || |||| Sbjct 405 AACAAGCAACACCAAGCATAAAATGAAGTACTACAAATTGATATGTACCACCATTATATA 346 Query 41248 GCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||||| || | | | ||||| | ||| |||||||| | || || || |||| Sbjct 345 AGCACTCATCAAATCCATTTGACTCCCAAACTGGATAGAAATGAACCCCAATAGCATTAG 286 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | || || | |||||||| | |||||| || || || || | | ||||| | || | Sbjct 285 AACTTGGTATTACAGCTCCTGTTATAATGTTATTGCCATAAAGAAGTGAGCCAGCTACTG 226 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGC---GAT-TATGAAA 41423 | || | ||| ||||| |||||||| | ||||| ||||| || ||| || | || Sbjct 225 GTTCTCTTATTCCATCAATATCTACTGCAGGTGCAAGAATAAAAGCTGTGATATAAGCAA 166 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 | || || ||||| || | |||| |||||| | |||||| || || | ||| || Sbjct 165 TAGTTGCTA-AAGTTA--AAAGAGGGAA-CATTAGGATACCAAAGCACCCAATGTAGAGA 110 Query 41484 CGGTT 41488 || || Sbjct 109 CGATT 105 >seq75038 Length=481 Score = 255 bits (282), Expect = 2e-63 Identities = 346/480 (72%), Gaps = 2/480 (0%) Strand=Plus/Plus Query 40677 TTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCA 40736 ||||| ||||| || || || || | || || | ||| || |||| || || || | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 40737 CCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTA 40796 | | ||||| |||| | || || ||||| ||||||||||| || |||| | | Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 40797 CCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTAT-A 40855 ||||| ||||| ||||| ||||| |||||||| || || |||| || || || ||| | Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 40856 CCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCT 40915 || | | || | ||||||| |||| || || || ||||| | ||| |||||||| | Sbjct 181 CCAGCATTTGT-TGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGA 239 Query 40916 TCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAA 40975 || |||||||||| ||| || | ||||||||| || || || || || | |||||| || Sbjct 240 ACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAA 299 Query 40976 TGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACT 41035 || ||||| | ||| || || ||||||||||| |||| ||| || ||||| ||||| Sbjct 300 AGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGA 359 Query 41036 GATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATAC 41095 |||||||||||||| ||||| || || || || ||||| | ||| |||| ||| ||||| Sbjct 360 AATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATAC 419 Query 41096 AGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 || || |||| | |||| ||| || || ||| ||||| || | ||| ||||| Sbjct 420 CGCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAG 479 >seq12672 Length=424 Score = 242 bits (268), Expect = 1e-59 Identities = 309/423 (73%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 40677 TTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCA 40736 ||||| ||||| || || || || | || || | ||| || |||| || || || | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 40737 CCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTA 40796 | | ||||| |||| | || || ||||| ||||||||||| || |||| | | Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 40797 CCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATAC 40856 ||||| ||||| ||||| ||||| |||||||| || || |||| || || || |||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 40857 CC-GTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCT 40915 || | | || | ||||||| |||| || || || ||||| | ||| |||||||| | Sbjct 244 CCAGCATTTGT-TGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGA 186 Query 40916 TCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAA 40975 || |||||||||| ||| || | ||||||||| || || || || || | |||||| || Sbjct 185 ACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAA 126 Query 40976 TGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACT 41035 || ||||| | ||| || || ||||||||||| |||| ||| || ||||| ||||| Sbjct 125 AGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGA 66 Query 41036 GATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATAC 41095 |||||||||||||| ||||| || || || || ||||| | ||| |||| ||| ||||| Sbjct 65 AATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATAC 6 Query 41096 AGC 41098 || Sbjct 5 CGC 3 >seq174641 Length=312 Score = 212 bits (234), Expect = 2e-50 Identities = 211/269 (78%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||| ||| ||| || | ||| ||||| || || || || || || ||||||||| Sbjct 45 CCATGCATTGCACTAAATAATGAACCTCCAAATACACCAGCTACTCCTAGGATATGGAAT 104 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 || ||||| | |||||| |||||||||||||| |||| ||| || || || |||||||| Sbjct 105 GGATGCATTAAAATGTTATGTTCTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTT 164 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 |||||||||||||| ||||| || || | | ||||| | ||||||||| | ||||| Sbjct 165 ATTCCTAAAGGCATTCCATCGGAAAAGCTAGCTTGACCAATTGGATAAACAACAAATACT 224 Query 41097 GCTAGAGCTGCTGACAA-TGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 || | ||||||| |||| || |||| | | || ||||||||||||||||||||||||| Sbjct 225 GCAAAAGCTGCT-ACAACAGGTGCTGAGAAAGCTACAAATATCCATGGTCTCATACCTAA 283 Query 41156 TCTGTA--TGAAAGTTCCCACTGTCTACC 41182 |||| | |||| |||||| | |||||| Sbjct 284 TCTGAAACTGAA--TTCCCATTCTCTACC 310 >seq75039 Length=421 Score = 201 bits (222), Expect = 3e-47 Identities = 278/383 (73%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 41136 ATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTAT-GCTGC 41194 ||||| || | ||| ||||| | | ||||||||||| | | || | ||| || | Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCC--CATATAGCAAC 59 Query 41195 TACT-CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACT 41253 | | |||| |||||||| | ||||| | |||||| ||||| || || |||||||| | Sbjct 60 AAATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATT 119 Query 41254 CGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCG 41313 | || | | | |||||||| ||||| || ||||||| || |||||||| || | | Sbjct 120 CATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAG 179 Query 41314 GAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCAC 41373 ||| | ||| || | ||||||||||| || || | ||| || || ||||| || |||| Sbjct 180 GAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCAC 239 Query 41374 GTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTA 41432 | || ||||| |||||||| || ||||| || | ||| || || || || ||| | |||| Sbjct 240 GAATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACA-GAGGTA 298 Query 41433 GCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCG 41492 || |||| ||| | ||||||||| || ||||||||||| | |||| ||||| || Sbjct 299 GCTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCT 358 Query 41493 GTGCTAGTGACCCAGTTACAAAA 41515 || ||||| | ||| | |||||| Sbjct 359 GTACTAGTAATCCATTCACAAAA 381 >seq25321 Length=478 Score = 194 bits (214), Expect = 5e-45 Identities = 236/319 (74%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 41198 TCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTC 41257 ||||| |||||||| | ||||| | |||||| ||||| || || |||||||| || || Sbjct 446 TCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCATC 387 Query 41258 CAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAAC 41317 | | | |||||||| ||||| || ||||||| || |||||||| || | |||| Sbjct 386 TAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGAAT 327 Query 41318 GACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTAT 41377 | ||| || | ||||||||||| || || | ||| || || ||||| || ||||| || Sbjct 326 AATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGAAT 267 Query 41378 GCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAG 41436 ||||| ||||| || || ||||| || | ||| || || || || ||| | |||||| | Sbjct 266 TCCATCAATATCAACTGGAGGTGCAGCAACAAAAGCAATAATAAATACA-GAGGTAGCTG 208 Query 41437 TTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGC 41496 ||| ||| | ||||||||| || ||||||||||| | |||| ||||| || || | Sbjct 207 TTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATATAATCGGTTATCTGTAC 148 Query 41497 TAGTGACCCAGTTACAAAA 41515 |||| | ||| | |||||| Sbjct 147 TAGTAATCCATTCACAAAA 129 >seq174640 Length=289 Score = 147 bits (162), Expect = 6e-31 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40650 GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTA 40709 || ||||| ||||| |||||||| | ||| |||||||| ||| || || | | || Sbjct 47 GATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAAGTGCTGTG 106 Query 40710 AGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTG 40769 | ||| || |||||||| || |||| | || |||||||| || ||| || ||| Sbjct 107 AACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTTATTG 166 Query 40770 AATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAA 40829 || ||||||||||||||||| ||||||||||| ||||| || || ||| ||| ||||| Sbjct 167 AAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCTATAA 226 Query 40830 GTCTCGCCTTCCTGACCAAACTTATACCC 40858 || || |||| |||||||||||||| || Sbjct 227 GTTTCATCTTCTTGACCAAACTTATATCC 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143270616320952