Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq174639 295 8e-75 seq75038 271 9e-68 seq12672 248 1e-60 seq75039 187 3e-42 seq174641 176 5e-39 seq25321 170 2e-37 seq174640 127 2e-24 seq174642 102 9e-17 >seq174639 Length=919 Score = 295 bits (326), Expect = 8e-75 Identities = 516/745 (69%), Gaps = 11/745 (1%) Strand=Plus/Minus Query 67524 ACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGA 67583 || || | ||| |||||||| || | | || || | || || ||||||||||||||| Sbjct 898 ACTCCAAGTGCTGTGAACCAAATCCCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGA 839 Query 67584 CTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCA 67643 || | ||||| ||||| || ||||| || || || | | ||| || || ||||| || Sbjct 838 CTACGAGAGTTATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCT 779 Query 67644 GCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGT-AGTTCTGTGACTC 67702 || ||| | ||||| || |||||||| || ||||| || || | || | | | Sbjct 778 GCTGATATGCTATAAGTTTCATCTTCTTGACCAAACTTATATCCAACATTTAGGCTAATA 719 Query 67703 TTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAA 67762 | | | | ||||||| | ||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 718 TCTC-CTGCAGTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATGCATTGCACTAAA 660 Query 67763 GAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTT 67822 | |||||| || |||||||| |||||||| || ||||||||||| ||||| | ||||| Sbjct 659 TAATGAACCTCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTT 600 Query 67823 GTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGC 67882 || |||||||||||||| | ||| | |||||||| ||| || || | ||||||| | Sbjct 599 ATGTTCTGCTTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCC 540 Query 67883 GTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACAC 67942 || || || | ||||||| | ||||| || | || || || || ||||| || Sbjct 539 ATCGGAAAAGCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAAGCTGCTACAAC 480 Query 67943 TGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCA 68002 || || ||| | |||||| | ||||| || | |||||| | | | || | |||||| Sbjct 479 AGGTGCTGAGAAAGCTACAAATATCCATGGTCTCATACCTAATCTGAAACTGAATTCCCA 420 Query 68003 CTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAA 68059 | | ||| || | || | || | | || || | ||||||| ||| | Sbjct 419 TTCTCTACCCATCCAACAAGC---AACACCAAGCATAAAATGAAGTACTACAAATTGATA 363 Query 68060 AGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTG 68119 | ||||||||||| || |||||||| | || ||||| | |||||||| || Sbjct 362 TGTACCACCATTATATAAGCACTCATCAAATCCATTTGACTCCCAAACTGGATAGAAATG 303 Query 68120 AAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACAT 68179 || || || || || ||||| || | ||||| || | || ||||| || || || | Sbjct 302 AACCCCAATAGCATTAGAACTTGGTATTACAGCTCCTGTTATAATGTTATTGCCATAAAG 243 Query 68180 GAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAA 68239 || || || || || |||||||| || ||||| ||||| |||| |||||| ||| || Sbjct 242 AAGTGAGCCAGCTACTGGTTCTCTTATTCCATCAATATCTACTGCAGGTGCAAGAATAAA 183 Query 68240 TGCAATGAT-GAAGCA--AGTTGCT 68261 || |||| ||||| ||||||| Sbjct 182 AGCTGTGATATAAGCAATAGTTGCT 158 >seq75038 Length=481 Score = 271 bits (300), Expect = 9e-68 Identities = 351/482 (73%), Gaps = 2/482 (0%) Strand=Plus/Plus Query 67506 TTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCA 67565 || |||||||| ||||| | || | | ||||||||| || | || ||||| | | Sbjct 1 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 60 Query 67566 GCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGA 67625 || | |||||| || | | | |||||| |||||||| ||||| ||||| || || ||| Sbjct 61 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 120 Query 67626 CCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAA 67685 || || || ||||| || || |||||||| || || ||||||||||||||||| | ||| Sbjct 121 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 180 Query 67686 CC-GTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGA 67744 || | | || | ||| || | ||||| ||||| | || | || |||||||| | || Sbjct 181 CCAGCATTTGT-TGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGA 239 Query 67745 ACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAA 67804 ||| ||||||||| ||| | ||||||||| || ||||| ||||| || | |||||| || Sbjct 240 ACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAA 299 Query 67805 TGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGA 67864 || ||||| | || || |||||||||||||| || | ||| | || ||||| || || Sbjct 300 AGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGA 359 Query 67865 AATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACAC 67924 ||| || | ||||||| | || || || || |||||||| | || || | || || || Sbjct 360 AATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACCAATTGGGTAAATTAAAAATAC 419 Query 67925 AGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAG 67984 || || || | |||||| | || || |||||| |||||||| ||||| || || Sbjct 420 CGCAGTCGCAGCTGCAACTGGACCTGAATAAGCTACAGCAATCCAAGGGCGCATTCCTAG 479 Query 67985 AC 67986 || Sbjct 480 AC 481 >seq12672 Length=424 Score = 248 bits (274), Expect = 1e-60 Identities = 296/399 (74%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 67506 TTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCA 67565 || |||||||| ||||| | || | | ||||||||| || | || ||||| | | Sbjct 424 TTAAATGCCATTGTTGAAATTCCTAAAGAAGTGAACCAAATTCCAACTACAGGCCAAATA 365 Query 67566 GCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGA 67625 || | |||||| || | | | |||||| |||||||| ||||| ||||| || || ||| Sbjct 364 GCTAAGAAGAAATGTAAAGAGCGTGAGTTATTGAAAGAAGCATATTGGAAAATTAAACGA 305 Query 67626 CCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAA 67685 || || || ||||| || || |||||||| || || ||||||||||||||||| | ||| Sbjct 304 CCAAAATAACCATGTGCTGCTACAATGTTATATGTTTCTTCTTCTTGTCCGAATCTATAA 245 Query 67686 CC-GTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGA 67744 || | | || | ||| || | ||||| ||||| | || | || |||||||| | || Sbjct 244 CCAGCATTTGT-TGATTCATTTTCAGTTGTTTCACGAATTAATGATGAAGTAACCAATGA 186 Query 67745 ACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAA 67804 ||| ||||||||| ||| | ||||||||| || ||||| ||||| || | |||||| || Sbjct 185 ACCATGCATAGCAGAAAATAATGAACCACCAAACACACCAGCTACACCTAACATATGAAA 126 Query 67805 TGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGA 67864 || ||||| | || || |||||||||||||| || | ||| | || ||||| || || Sbjct 125 AGGATGCATTAAAATATTATGCTCTGCTTGGAAAACAATCATAAAATTGAAAGTTCCTGA 66 Query 67865 AATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 ||| || | ||||||| | || || || || |||||||| Sbjct 65 AATTCCTAAAGGCATTCCATCCGAAAATGATCCTTGACC 27 >seq75039 Length=421 Score = 187 bits (206), Expect = 3e-42 Identities = 252/346 (73%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTAT-GCTGT 68023 |||||||| ||||| || ||||| | ||||||||||| | ||| || || ||| || Sbjct 2 ATCCAAGGGCGCATTCCTAGACGAAACGAAAGTTCCCATTCACGTCC-CA-TATAGCAAC 59 Query 68024 GA-TTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACT 68082 | |||| | | |||||| | || | | ||| |||||||||||||||| | ||| | Sbjct 60 AAATTCCTAAGAAAAAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATT 119 Query 68083 CATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAG 68142 |||||| || || |||||||| || ||||| || || | ||| |||||||||||| ||| Sbjct 120 CATCTAAAGAAGCAGCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAG 179 Query 68143 GAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTC 68202 ||| || ||| || | ||| || ||||| || || | | ||||| | ||||||||| | Sbjct 180 GAATAATAGCCCCTGTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCAC 239 Query 68203 TGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTG 68262 || ||||| ||||| ||||||||||| |||| || ||||| || || || | | Sbjct 240 GAATTCCATCAATATCTACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAG 299 Query 68263 CTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATA 68308 ||| | || |||||||| | || || |||||||||| ||| Sbjct 300 CTGTTAATAAAGTTGGAATCATGCAAACTCCAAACCAACCAATATA 345 >seq174641 Length=312 Score = 176 bits (194), Expect = 5e-39 Identities = 201/270 (74%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 67712 AGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACC 67771 ||||||| | ||| ||||| ||||| | ||||| ||||| |||||||| | |||||| Sbjct 11 AGTTTCTGCAAGAAGTGAAGATGTAACTAATGAACCATGCATTGCACTAAATAATGAACC 70 Query 67772 ACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGC 67831 || |||||||| |||||||| || ||||||||||| ||||| | ||||| || ||||| Sbjct 71 TCCAAATACACCAGCTACTCCTAGGATATGGAATGGATGCATTAAAATGTTATGTTCTGC 130 Query 67832 TTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAA 67891 ||||||||| | ||| | |||||||| ||| || || | ||||||| | || || || Sbjct 131 TTGGAACACAAGCATAAAATTAAAAGTTCCACTTATTCCTAAAGGCATTCCATCGGAAAA 190 Query 67892 AGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGA 67951 | ||||||| | ||||| || | || || || || ||||| || || || || Sbjct 191 GCTAGCTTGACCAATTGGATAAACAACAAATACTGCAAAAGCTGCTACAACAGGTGCTGA 250 Query 67952 GTATGCTACACAGATCCAAGGACGCATACC 67981 | | |||||| | ||||| || | |||||| Sbjct 251 GAAAGCTACAAATATCCATGGTCTCATACC 280 >seq25321 Length=478 Score = 170 bits (188), Expect = 2e-37 Identities = 201/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 68037 AAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCT 68096 |||||| | || | | ||| |||||||||||||||| | ||| ||||||| || || Sbjct 436 AAGTGGCAAACAATTAATTGATAAGGTCCACCATTATATAGCCATTCATCTAAAGAAGCA 377 Query 68097 GCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCA 68156 |||||||| || ||||| || || | ||| |||||||||||| |||||| || ||| || Sbjct 376 GCTTCCCAAATTGGATAAAAATGTAAACCAATTGCGTTTGAAGTAGGAATAATAGCCCCT 317 Query 68157 GAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATA 68216 | ||| || ||||| || || | | ||||| | ||||||||| | || ||||| ||| Sbjct 316 GTAATAATATTGTTTCCATATAATAATGAACCAGAAACAGGTTCACGAATTCCATCAATA 257 Query 68217 TCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAA 68276 |||||||||||||| |||| || ||||| || || || | |||| | || Sbjct 256 TCAACTGGAGGTGCAGCAACAAAAGCAATAATAAATACAGAGGTAGCTGTTAATAAAGTT 197 Query 68277 GGAATCATCAACACACCGAACCAACCAACATA 68308 |||||||| | || || |||||||||| ||| Sbjct 196 GGAATCATGCAAACTCCAAACCAACCAATATA 165 >seq174640 Length=289 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||||||| ||||| || | |||||| ||||| || || || | ||| Sbjct 43 GATGGATTGGTTGAAGTTTAAACCATTTAAGTTGAAAGCCATTGTACTTACTCCAAGTGC 102 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||| || | | || || | || || ||||||||||||||||| | ||||| Sbjct 103 TGTGAACCAAATACCAATAACTGGCCAAGCTGCTAGGAAGAAGTGAAGACTACGAGAGTT 162 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||| || ||||| || || || | | ||| || || ||||| || || ||| | Sbjct 163 ATTGAAGGAAGCATATTGAAATATGAGTCTACCAAAATAACCATGGGCTGCTGATATGCT 222 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACC 67687 ||||| || |||||||| || ||||| || || Sbjct 223 ATAAGTTTCATCTTCTTGACCAAACTTATATCC 255 >seq174642 Length=303 Score = 102 bits (112), Expect = 9e-17 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 68042 GAAG-ACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTT 68100 |||| ||||||| ||| | | ||||||||||| || |||||||| | || | Sbjct 28 GAAGTACTACAAATTGATATGTACCACCATTATATAAGCACTCATCAAATCCATTTGACT 87 Query 68101 CCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAA 68160 |||| | |||||||| |||| || || || || ||||| || | ||||| || | | Sbjct 88 CCCAAACTGGATAGAAATGAACCCCAATAGCATTAGAACTTGGTATTACAGCTCCTGTTA 147 Query 68161 TGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAA 68220 | ||||| || || || | || || || || || |||||||| || ||||| ||||| | Sbjct 148 TAATGTTATTGCCATAAAGAAGTGAGCCAGCTACTGGTTCTCTTATTCCATCAATATCTA 207 Query 68221 CTGGAGGTGCTGCAATGAATGCAATGAT-GAAGCA--AGTTGCT 68261 ||| |||||| ||| || || |||| ||||| ||||||| Sbjct 208 CTGCAGGTGCAAGAATAAAAGCTGTGATATAAGCAATAGTTGCT 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565154031048480