Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq131321 174 3e-38 seq99092 165 1e-35 seq77635 143 5e-29 seq99093 138 2e-27 seq77720 134 2e-26 seq65045 118 2e-21 seq24851 118 2e-21 seq95675 114 2e-20 seq127998 113 8e-20 seq143707 104 4e-17 seq95674 91.5 3e-13 seq149515 86.0 1e-11 seq143705 86.0 1e-11 >seq131321 Length=300 Score = 174 bits (192), Expect = 3e-38 Identities = 149/184 (81%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||||||||| || ||||| |||||| ||| ||||||||||| || ||||| |||||||| Sbjct 4 AATATTATAATCAGATAATGTTCTACCATCCTCTAATTGTTTACCTGCAAATATTAATCT 63 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||| || || |||||||||||||||||||||||||| | ||||| |||| || || Sbjct 64 TTGTTGTTCTGGTGGTATTCCTTCTTTATCTTGTATTTTTGCTTTTACATTTTGTATTGT 123 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| | ||||| |||| || || |||||||| |||| ||||| ||||||||||| Sbjct 124 ATCATTTGCTTCAACATCTAATGTAATTGTTTTACCAGTTAATGTTTTAACAAATATTTG 183 Query 193358 CATT 193361 |||| Sbjct 184 CATT 187 >seq99092 Length=231 Score = 165 bits (182), Expect = 1e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| || || | ||| | ||||||||| | ||||| ||||||||| || || Sbjct 207 ACCACCTCTTAAACGTAATACTAAATGCAATGTTGATTCTTTTTGAATATTATAATCAGA 148 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| ||||||||||| || ||||| |||||||| ||||| || || || Sbjct 147 TAATGTACGTCCATCTTCTAATTGTTTACCTGCAAATATTAATCTTTGTTGTTCTGGTGG 88 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||||||||||||| ||||| | ||||| |||| ||| ||||| | ||||| Sbjct 87 TATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTTTGAATTGTATCATTTGCTTCAAC 28 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTA 193338 |||| || || ||||||||||||| Sbjct 27 ATCTAATGTAATTGTTTTACCTGTTA 2 >seq77635 Length=207 Score = 143 bits (158), Expect = 5e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 193157 ATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTG 193216 ||| ||||| | ||||| || || || || ||||| || | | ||| |||||||| Sbjct 6 ATGTAATGTGGATTCTTTTTGGATGTTGTAATCAGATAATGTACGACCATCTTCTAATTG 65 Query 193217 TTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTT 193276 |||||| |||||||| |||| ||||| || ||||| || |||||||||||||| ||||| Sbjct 66 TTTTCCTGCAAAAATCAATCGTTGTTGCTCTGGAGGAATACCTTCTTTATCTTGAATTTT 125 Query 193277 GGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 | ||||| |||| || ||||| | ||||| |||| ||| || ||||| || || Sbjct 126 TGCTTTTACATTTTGTATGGTATCATTTGGTTCAACGTCTAAAGTGATTGTTTTTCCCGT 185 Query 193337 TAGCGTTTTTACAAATATTTGC 193358 || ||||| |||||||||||| Sbjct 186 TAATGTTTTAACAAATATTTGC 207 >seq99093 Length=221 Score = 138 bits (152), Expect = 2e-27 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 193170 TCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAA 193229 ||||| ||||||||| || ||||| || | ||| ||||||||||| || ||||| Sbjct 170 TCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAATTGTTTACCTGCAAAT 111 Query 193230 ATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 |||||||| ||||| || || |||||||||||||||||||| ||||| | ||||| |||| Sbjct 110 ATTAATCTTTGTTGTTCTGGTGGTATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTT 51 Query 193290 AAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTA 193338 ||| ||||| | ||||| |||| || || ||||||||||||| Sbjct 50 TGAATTGTATCATTTGCTTCAACATCTAATGTAATTGTTTTACCTGTTA 2 >seq77720 Length=294 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| |||||||| | | |||||||| ||||| | |||| || || |||||| || Sbjct 20 TTACATACCACCACGAAGGCGAAGTACAAGATGGAGAGTAGATTCCTTCTGAATATTGTA 79 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| |||| || | | ||| || | || || ||||| ||||| | | ||||| || Sbjct 80 GTCCGATAGAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAAATGAGACGTTGTTGGTC 139 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||||| |||||||| || || || ||||||| ||| | ||| ||||||||| || || Sbjct 140 CGGAGGGATTCCTTCCTTGTCCTGAATTTTGGATTTAACATTCTCAATAGTATCCGAGGA 199 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || || ||||| || || || | || ||||| || || ||||| Sbjct 200 CTCAACTTCGAGGGTAATAGTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 253 >seq65045 Length=242 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 |||||||| ||||| | |||| || || |||||| ||||| |||| || | | | Sbjct 230 CGAAGTACAAGATGAAGAGTAGATTCCTTCTGAATATTGTAGTCCGATAGAGTGCGACCA 171 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| ||||| | | ||||| || ||||| |||||||| || Sbjct 170 TCCTCAAGCTGCTTACCGGCGAAAATGAGACGTTGTTGGTCCGGAGGGATTCCTTCCTTG 111 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | ||| ||||||||| || ||||||||||| || || ||| Sbjct 110 TCCTGAATTTTAGACTTGACATTCTCAATAGTATCCGAGGACTCAACTTCGAGGGTGATA 51 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || ||||| || || ||||| Sbjct 50 GTCTTTCCGGTCAAAGTCTTTACGAAAATCTGCAT 16 >seq24851 Length=429 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || | | ||| ||||| || | |||| |||||| ||| ||||| || Sbjct 77 ATACCCCCCCTGAGCCTAAGAACCAGGTGGAGAGTAGACTCTTTCTGAATGTTATAATCA 136 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| |||| || |||||||||||||||| | ||| || || || Sbjct 137 GAAAGGGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAAATTAGCCGCTGCTGGTCTGGT 196 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || || |||| || | ||| || ||||| || | |||| Sbjct 197 GGGATCCCCTCCTTATCCTGAATCTTGGACTTGACATTCTCTATGGTATCAGAGGGCTCA 256 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||||| || ||||| || || || || || |||||||| ||||| Sbjct 257 ACCTCTAGAGTAATCGTTTTTCCAGTCAGAGTCTTGACAAATATCTGCAT 306 >seq95675 Length=322 Score = 114 bits (126), Expect = 2e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| ||||||||||| | ||| || ||||| || || || || ||||| || || Sbjct 270 TGTTTTCCAGCAAAAATTAAACGCTGCTGGTCAGGCGGAATGCCCTCCTTATCCTGAATC 211 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| || ||| ||||| |||| ||||||||| ||||| || || || ||| Sbjct 210 TTGGACTTTACGTTCTCAATGGTATCCGAAGGCTCAACTTCGAGAGTGATCGTCTTGCCT 151 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||| ||||| Sbjct 150 GTGAGGGTCTTCACAAATATCTGCAT 125 >seq127998 Length=685 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || || || || | ||||| ||| || | ||| || || |||||||| | || | Sbjct 479 ATGTTGTAATCAGAAAGTGTTCTGCCATCTTCCAGTTGCTTGCCTGCAAAAATGAGTCGC 538 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||||||||| || ||||| ||||| || || || ||||| | |||| || | | Sbjct 539 TGTTGATCAGGAGGAATACCTTCCTTATCCTGAATCTTAGTTTTCACATTTTCGATGGAA 598 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || || || || || |||||||| ||||| || ||||| ||||| || ||| Sbjct 599 TCCGATGGTTCCACCTCAAGGGTGATAGTTTTCCCTGTCAGGGTTTTCACAAAGATCTGC 658 Query 193359 AT 193360 || Sbjct 659 AT 660 >seq143707 Length=308 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| || || || | || | |||||| ||| || ||||| Sbjct 26 ATTCCACCTCTCAAGCGAAGAACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 85 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || | ||| || | |||||| || || ||||| | | ||||||||| || Sbjct 86 CTCAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCGGGC 145 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || || || | ||| ||| | ||| | ||| Sbjct 146 GGGATGCCTTCTTTGTCTTGGATCTTCGTCTTCACATTCTCGATACTGTCGCTTGGTTCA 205 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| ||||| || || || || || || || ||||| Sbjct 206 ACTTCAAGAGTGATAGTCTTACCGGTCAGAGTCTTCACGAAGATCTGCAT 255 >seq95674 Length=384 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || || || || ||||| | ||| || | || || || |||||||| | || Sbjct 235 AATGTTGTAATCAGACAACGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATCAGCCT 176 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||||||| || || || || || || ||||| || || | |||| |||| ||| || Sbjct 175 CTGTTGATCTGGTGGGATCCCCTCCTTGTCTTGGATCTTCGCCTTTACATTTTCAATGGT 116 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || || | |||||| || | ||| || || || || || || || |||||||| || || Sbjct 115 GTCTGATGGCTCAACCTCCAAAGTGATTGTCTTCCCCGTGAGTGTCTTTACAAAGATCTG 56 Query 193358 CAT 193360 ||| Sbjct 55 CAT 53 >seq149515 Length=449 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||||||| | || | | ||| || || |||||||| || || || | ||| Sbjct 198 ATATTATAGTCGCTCAGAGTGCGACCATCCTCCAACTGTTTTCCAGCGAAGATCAGCCTC 139 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || ||||| || ||||| || || || || | ||| || | | Sbjct 138 TGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTTGTCTTCACATTCTCGATGGAA 79 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| || || ||||| || || || ||||| || || || ||||| || || || ||| Sbjct 78 TCGCTAGGTTCTACTTCCAGGGTAATGGTTTTGCCAGTCAGGGTTTTGACGAAGATCTGC 19 Query 193359 AT 193360 || Sbjct 18 AT 17 >seq143705 Length=477 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||||||| | || | | ||| || || |||||||| || || || | ||| Sbjct 256 ATATTATAGTCGCTCAGAGTGCGACCATCCTCCAACTGTTTTCCAGCGAAGATCAGCCTC 315 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || || ||||| || ||||| || || || || | ||| || | | Sbjct 316 TGTTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTTGTCTTCACATTCTCGATGGAA 375 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||| || || ||||| || || || ||||| || || || ||||| || || || ||| Sbjct 376 TCGCTAGGTTCTACTTCCAGGGTAATGGTTTTGCCAGTCAGGGTTTTGACGAAAATCTGC 435 Query 193359 AT 193360 || Sbjct 436 AT 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896808928080960