Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq174592 141 1e-27 seq112138 123 3e-22 seq174590 120 4e-21 seq142104 118 1e-20 seq139941 118 1e-20 seq112139 111 2e-18 seq187632 93.3 5e-13 seq187631 93.3 5e-13 seq174589 93.3 5e-13 seq89999 87.8 2e-11 >seq174592 Length=534 Score = 141 bits (156), Expect = 1e-27 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| ||| ||| | ||| | | |||||||||||||||||| | || ||| | Sbjct 156 TGGCCAGTTCACCGGGCAGAAGCAGCCTGATGGCGGTCTGGATCTCGCGGGAGCTGATGG 215 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||| |||| || || ||| || |||||| ||||||| |||| |||| Sbjct 216 TTGATTTCTTGTTGTAGTGGGCAAGGCGGGAAGCTTCGGTGGCGATGCGCTCGAAGATGT 275 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| ||||||||||||| ||| | ||| ||||||| || ||| ||||| | Sbjct 276 CGTTGACGAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAA 335 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 | ||||| | ||||||||||||| Sbjct 336 CTTGCTTCAACACCTTGTAGATG 358 >seq112138 Length=946 Score = 123 bits (136), Expect = 3e-22 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||||||| | | | ||| | | |||||||||||||||||| | | || || Sbjct 254 GCAAGTTCGCCGGGTAGAAGCAGCCTGATGGCGGTCTGGATCTCGCGAGAACTAATTGTC 195 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| ||||| || || |||||| ||||||| |||| || ||| Sbjct 194 GACTTCTTGTTGTAGTGTGCCAGTCGCGAAGCTTCGGTGGCGATGCGTTCGAAGATATCG 135 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||| |||||||||| ||| | ||| ||||||| || ||||||||| || Sbjct 134 TTGACAAAAGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCGGGGTGAACT 75 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||||||||| Sbjct 74 TGCTTCAACACCTTGTAGATG 54 >seq174590 Length=1068 Score = 120 bits (132), Expect = 4e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||||||| | | | ||| | | |||||||||||||||||| | | || || Sbjct 692 GCAAGTTCGCCGGGTAGAAGCAGCCTGATGGCGGTCTGGATCTCGCGGGAACTAATTGTC 751 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| ||||| || || |||||| ||||||| |||| || ||| Sbjct 752 GACTTCTTGTTGTAGTGTGCCAGTCGCGAAGCTTCGGTGGCGATGCGTTCGAAGATATCG 811 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||| |||||||||| ||| | ||| ||||||| || ||| ||||| || Sbjct 812 TTGACAAAAGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACT 871 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||||||||| Sbjct 872 TGCTTCAACACCTTGTAGATG 892 >seq142104 Length=1514 Score = 118 bits (130), Expect = 1e-20 Identities = 215/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || || || |||||||| || || ||| |||||| |||||| Sbjct 958 GAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGG 1017 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || |||| | || | | ||| |||||| ||| ||||| ||||| || ||||| Sbjct 1018 ACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAG 1077 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || ||||||||||| || | | || || || || |||||| | Sbjct 1078 AAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCT 1137 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | || || || |||||||| ||||||| ||||| || |||||||||||| Sbjct 1138 TTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTAC 1197 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAG-AGGACAAAGCGGTTGGGGTTGTCGCG 869931 || | ||| | | | || |||| |||||| || ||||| |||| || || || || Sbjct 1198 ATTTGCCAAATATCTTTATATTGGAT-GGGAAGAAGAACAAATCGGTGTGGATTTTCTCG 1256 Query 869932 CAACAGGGGTTC 869943 | || ||||| Sbjct 1257 GAGAAGTGGTTC 1268 >seq139941 Length=1515 Score = 118 bits (130), Expect = 1e-20 Identities = 215/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || || || |||||||| || || ||| |||||| |||||| Sbjct 557 GAGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGG 498 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || |||| | || | | ||| |||||| ||| ||||| ||||| || ||||| Sbjct 497 ACTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAG 438 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || ||||||||||| || | | || || || || |||||| | Sbjct 437 AAAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCT 378 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | || || || |||||||| ||||||| ||||| || |||||||||||| Sbjct 377 TTATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTAC 318 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAG-AGGACAAAGCGGTTGGGGTTGTCGCG 869931 || | ||| | | | || |||| |||||| || ||||| |||| || || || || Sbjct 317 ATTTGCCAAATATCTTTATATTGGAT-GGGAAGAAGAACAAATCGGTGTGGATTTTCTCG 259 Query 869932 CAACAGGGGTTC 869943 | || ||||| Sbjct 258 GAGAAGTGGTTC 247 >seq112139 Length=201 Score = 111 bits (122), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1254413 CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1254472 |||||| |||| || || ||| || |||||| ||||||| |||| ||||||||||| Sbjct 189 CTTGTTGTAGTGGGCAAGGCGGGAAGCTTCGGTGGCGATGCGCTCGAAGATGTCGTTGAC 130 Query 1254473 AAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1254532 ||||||||||||| ||| | ||| ||||||| || ||||||||| || ||||| Sbjct 129 GAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCGGGGTGAACTTGCTT 70 Query 1254533 GAGCACCTTGTAGATG 1254548 | ||||||||||||| Sbjct 69 CAACACCTTGTAGATG 54 >seq187632 Length=1708 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||| ||| ||| | || | | ||||||||||||||| || | | ||| || Sbjct 757 GCAAGTTCTCCGGGCAGAAGCAACCTGATGGCGGTCTGGATCTCTCGAGAACTGATGGTT 698 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| ||||||| || ||| | ||| ||| ||||||| |||| || || Sbjct 697 GATTTCTTGTTGTAGTGCGCTAGGCGGGAAGACTCAGTGGCGATGCGTTCGAAGATATCA 638 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||| ||||||| ||| | |||| | || || || ||||| || ||| Sbjct 637 TTCACGAACGAATTCATGATACCCATGGCCTTGCTAGAAATACCGGTATCGGGATGAACC 578 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || || || |||||||||||| Sbjct 577 TGTTTAAGGACCTTGTAGATG 557 >seq187631 Length=1733 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||| ||| ||| | || | | ||||||||||||||| || | | ||| || Sbjct 757 GCAAGTTCTCCGGGCAGAAGCAACCTGATGGCGGTCTGGATCTCTCGAGAACTGATGGTT 698 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| ||||||| || ||| | ||| ||| ||||||| |||| || || Sbjct 697 GATTTCTTGTTGTAGTGCGCTAGGCGGGAAGACTCAGTGGCGATGCGTTCGAAGATATCA 638 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||| ||||||| ||| | |||| | || || || ||||| || ||| Sbjct 637 TTCACGAACGAATTCATGATACCCATGGCCTTGCTAGAAATACCGGTATCGGGATGAACC 578 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || || || |||||||||||| Sbjct 577 TGTTTAAGGACCTTGTAGATG 557 >seq174589 Length=1165 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || ||||| ||| ||| | || | | ||||||||||||||| || | | ||| || Sbjct 409 GCAAGTTCTCCGGGCAGAAGCAACCTGATGGCGGTCTGGATCTCTCGAGAACTGATGGTT 468 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| ||||||| || ||| | ||| ||| ||||||| |||| || || Sbjct 469 GATTTCTTGTTGTAGTGCGCTAGGCGGGAAGACTCAGTGGCGATGCGTTCGAAGATATCA 528 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||| ||||||| ||| | |||| | || || || ||||| || ||| Sbjct 529 TTCACGAACGAATTCATGATACCCATGGCCTTGCTAGAAATACCGGTATCGGGATGAACC 588 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || || || |||||||||||| Sbjct 589 TGTTTAAGGACCTTGTAGATG 609 >seq89999 Length=590 Score = 87.8 bits (96), Expect = 2e-11 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || ||||| || ||||||||||| ||||||| |||| | | || Sbjct 356 GAGTGGATGTTTTCCATGGCAATTTGGAAGCCGTAGAAGGCCCGGGCCTCAGGAATCTGC 415 Query 869693 ACCTCCTTCATG-AACCGGCCG-GCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 || || | | | || | || | |||| |||||| || ||||||||| ||| || | Sbjct 416 ACTTC--TGAGGAAAACTGCTGTGCCAAGTTCTCCAGGACTATGCCGTCGGAGGCAGCAA 473 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 |||| || || || ||||||| |||||| ||||| ||| | || |||||| | Sbjct 474 AAAATGCAAGCACATGCTTGACAAAGTGCTGCTCGCTCTCGGTAAGGTTCACCCAATCCT 533 Query 869811 CGGTGTC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTC 869859 | |||| | || ||||| | ||||| || ||||| | || ||||| Sbjct 534 TGTTGTCTTGTGC-AAGGTCGATTTCCTCAGCAGTCCAAAAGGATGCCTC 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6086374537389876