Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq127998 95.1 1e-14 seq21873 93.3 3e-14 seq9941 93.3 3e-14 seq149515 91.5 1e-13 seq143705 91.5 1e-13 seq119667 89.7 4e-13 seq119665 87.8 1e-12 seq119663 87.8 1e-12 seq21872 86.0 5e-12 seq98341 82.4 6e-11 >seq127998 Length=685 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | || || ||||| || ||| | || ||| || Sbjct 660 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAAACTATCACCCTTGAGGTGGAACCATCG 601 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||| | ||| | || ||| |||||| || || ||||| | || |||||| Sbjct 600 GATTCCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 541 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| |||| ||| || || || ||||| |||| ||||||| | | ||||||||| Sbjct 540 CAGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACAAC 481 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | ||| | ||||| || || || || || Sbjct 480 ATACAGAAAGAATCCACTCTTCACCTTGTGTTGAGGCTACGTGGCGG 434 >seq21873 Length=249 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 34500 TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTT 34559 ||||||||| ||| | || || | ||||||||| | |||||||| || ||||| || || Sbjct 247 TCCAAGCGCTTTGCCAATCTCTGTCATGTTGACAACAACAGTCTTAATCCCGTTTCCTTT 188 Query 34560 TCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAAC 34605 |||||| |||||||| | | ||||||||||||||||||||| Sbjct 187 TCCTTCCACCTTGGCAATAAGACAGGGCATTTTGTAGCGGTAGAAC 142 >seq9941 Length=214 Score = 93.3 bits (102), Expect = 3e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 110348 GTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTAT 110407 ||||| ||||||| |||||||| || | ||| || || || | || |||| | Sbjct 42 GTAAAGGCGAAGATTCAAGACAAAGAGGGAATTCCCCCTGACCAGCAGCGTCTAATTTTT 101 Query 110408 GCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCT 110467 ||||| || ||||||||||| | ||| || || | || |||||||||||||| || || Sbjct 102 GCGGGAAAGCAGCTGGAGGACGGCAGGACTCTGTCTGACTACAACATTCAAAAGGAGTCG 161 Query 110468 ACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| | ||| | ||||||| || |||| Sbjct 162 ACGTTGCATCTCGTGCTCCGACTGCGTGGTGGAA 195 >seq149515 Length=449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| | || ||||||||||||||| | ||| || ||| | Sbjct 17 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 76 Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | ||| | || || ||| ||||| ||||| |||||| | ||| || || Sbjct 77 GATTCCATCGAGAATGTGAAGACA-AAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 135 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | || || |||||| ||||||||| | || || || || || Sbjct 136 ACAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAA 195 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 || || || || ||||| | ||| | |||||| | ||||| || ||| Sbjct 196 TATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACGTCTGCGTGGTGGA 244 >seq143705 Length=477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| | || ||||||||||||||| | ||| || ||| | Sbjct 437 ATGCAGATTTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 378 Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | ||| | || || ||| ||||| ||||| |||||| | ||| || || Sbjct 377 GATTCCATCGAGAATGTGAAGACA-AAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 319 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | || || |||||| ||||||||| | || || || || || Sbjct 318 ACAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAA 259 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 || || || || ||||| | ||| | |||||| | ||||| || ||| Sbjct 258 TATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACGTCTGCGTGGTGGA 210 >seq119667 Length=392 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || || || ||||||| |||||||||||| | || |||||| Sbjct 24 ATGCAGATATTCGTGAAGACGCTAACCGGGAAAACCATTACCCTTGAGGTGGAGCCCTCT 83 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || |||||| ||||| ||||| | || || ||| Sbjct 84 GATACTATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATCCCGCCCGACCAA 143 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| || |||||||| || |||| | || || |||||||| Sbjct 144 CAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGATTACAAT 203 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || ||||| || Sbjct 204 ATTCAGAAGGAATCCAC 220 >seq119665 Length=456 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || ||||| ||||||||||| | || ||||| | Sbjct 265 ATGCAGATCTTTGTCAAGACGTTGACCGGGAAAACCATTACGTTGGATGTCGAGCCCTCC 324 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || |||||| ||||| |||||| | || || ||| Sbjct 325 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 384 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | |||||| |||||||| ||||| | | | || || | || |||||| Sbjct 385 CAGCGCCTGATCTTTGCGGGCAAACAGCTTGAGGACGGCCGGACCTTGTCCGACTACAAC 444 Query 110453 ATTCAAAAAGA 110463 || || ||||| Sbjct 445 ATCCAGAAAGA 455 >seq119663 Length=482 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || ||||| ||||||||||| | || ||||| | Sbjct 291 ATGCAGATCTTTGTCAAGACGTTGACCGGGAAAACCATTACGTTGGATGTCGAGCCCTCC 350 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || |||||| ||||| |||||| | || || ||| Sbjct 351 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAA 410 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | |||||| |||||||| ||||| | | | || || | || |||||| Sbjct 411 CAGCGCCTGATCTTTGCGGGCAAACAGCTTGAGGACGGCCGGACCTTGTCCGACTACAAC 470 Query 110453 ATTCAAAAAGA 110463 || || ||||| Sbjct 471 ATCCAGAAAGA 481 >seq21872 Length=203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || ||||| || || ||||| || ||||| | |||||||| ||||||||||||| Sbjct 169 AGGTCTGTCTCAGGATTTTCACACTCTGGACAGAGGACAAACTTCTTGATGAAACCATCA 110 Query 34375 AGCAGGTCCTGTAACTTAACGGAG---TCGTGGGAGCCGTTGACGATGAATCGTTCGTTT 34431 |||| | |||| | || |||| ||||||| || ||||| ||| | || | | | Sbjct 109 AGCATGGCCTGGAGTTT---GGAGCCTTCGTGGGCACCATTGACAATGTAGCGATTGCTC 53 Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTT 34478 ||| ||| | || || || || || ||||| || || |||||||| Sbjct 52 TTGGCATCCATTTGTGTCTGAGCACCAAGCTCACAGCCAAAGTACTT 6 >seq98341 Length=429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 |||||||| |||| |||| ||| || || || ||||| |||| ||||||| | | ||| Sbjct 62 GATCAACAGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGAT 121 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || |||||||| || | ||| | ||||| || || || || || Sbjct 122 TACAACATACAGAAAGAATCCACTCTTCACCTTGTGTTGAGGCTACGTGGCGG 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411568487846804