Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq174592 174 2e-37 seq174590 150 3e-30 seq112138 150 3e-30 seq92029 149 1e-29 seq89999 149 1e-29 seq187632 116 6e-20 seq187631 116 6e-20 seq174589 116 6e-20 seq112139 107 3e-17 seq142104 95.1 2e-13 seq139941 95.1 2e-13 seq70487 86.0 1e-10 >seq174592 Length=534 Score = 174 bits (192), Expect = 2e-37 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| || || |||||||| |||||||||| ||| ||| Sbjct 114 TGTACTTGGTCACAGCCTTGGTTCCTTCACTCACGGCGTGTTTGGCCAGTTCACCGGGCA 173 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||||| || ||| || |||||| | Sbjct 174 GAAGCAGCCTGATGGCGGTCTGGATCTCGCGGGAGCTGATGGTTGATTTCTTGTTGTAGT 233 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || |||||| ||||||| |||| ||||||||||| |||||||||| Sbjct 234 GGGCAAGGCGGGAAGCTTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 293 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||| || ||||| | |||||||| Sbjct 294 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACTTGCTTCAACACCTTGT 353 Query 1485710 A 1485710 | Sbjct 354 A 354 >seq174590 Length=1068 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| || || || |||||| | || ||||||||| | | Sbjct 648 TGTACTTGGTGACGGCTTTGGTTCCTTCGCTTACAGCGTGCTTCGCAAGTTCGCCGGGTA 707 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||||| | || || |||||| | Sbjct 708 GAAGCAGCCTGATGGCGGTCTGGATCTCGCGGGAACTAATTGTCGACTTCTTGTTGTAGT 767 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || |||||| ||||||| |||| || ||||||||||| ||||||| Sbjct 768 GTGCCAGTCGCGAAGCTTCGGTGGCGATGCGTTCGAAGATATCGTTGACAAAAGAGTTCA 827 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||| || ||||| | |||||||| Sbjct 828 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACTTGCTTCAACACCTTGT 887 Query 1485710 A 1485710 | Sbjct 888 A 888 >seq112138 Length=946 Score = 150 bits (166), Expect = 3e-30 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| ||||| || || || |||||| | || ||||||||| | | Sbjct 298 TGTACTTGGTGACGGCTTTGGTTCCTTCGCTTACAGCGTGCTTCGCAAGTTCGCCGGGTA 239 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||| | | || || |||||| | Sbjct 238 GAAGCAGCCTGATGGCGGTCTGGATCTCGCGAGAACTAATTGTCGACTTCTTGTTGTAGT 179 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || |||||| ||||||| |||| || ||||||||||| ||||||| Sbjct 178 GTGCCAGTCGCGAAGCTTCGGTGGCGATGCGTTCGAAGATATCGTTGACAAAAGAGTTCA 119 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||||||||| || ||||| | |||||||| Sbjct 118 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCGGGGTGAACTTGCTTCAACACCTTGT 59 Query 1485710 A 1485710 | Sbjct 58 A 58 >seq92029 Length=736 Score = 149 bits (164), Expect = 1e-29 Identities = 227/324 (70%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| |||||| ||| | || ||| |||| || || ||||| | || |||||| Sbjct 329 CCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCTCGCTTC 270 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| || || ||||||||| || ||| | ||| ||||| || || ||||| Sbjct 269 TTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCCGCAAAT 210 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || || ||||| ||||| || | || ||| ||||| | || ||||| Sbjct 209 GCCACAAGACGCTCAGCAAAGCTG------CTTTCACGGTTCATCCATTGGATGGCCCAA 156 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 ||||| | | || | |||| ||||| ||||| ||||||| ||||||||| Sbjct 155 CTAGCCTTCTCACGGACAGCTGGCATCGTGTGAATGGCATCGAAGAGGTCGTCCTTCTCC 96 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||||| ||| || || || |||||||||||||| |||||||||||||| Sbjct 95 TTTGGGTCCTTGATGTATTGCTCAATCAGCAGCGAGTAGGTCTCAGAGTGGATGTTTTCC 36 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 ||||| || |||||||| || ||| Sbjct 35 ATGGCAATTTGGAAGCCGTAGAAG 12 >seq89999 Length=590 Score = 149 bits (164), Expect = 1e-29 Identities = 227/324 (70%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| |||||| ||| | || ||| |||| || || ||||| | || |||||| Sbjct 77 CCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCTCGCTTC 136 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| || || ||||||||| || ||| | ||| ||||| || || ||||| Sbjct 137 TTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCCGCAAAT 196 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || || ||||| ||||| || | || ||| ||||| | || ||||| Sbjct 197 GCCACAAGACGCTCAGCAAAGCTG------CTTTCACGGTTCATCCATTGGATGGCCCAA 250 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 ||||| | | || | |||| ||||| ||||| ||||||| ||||||||| Sbjct 251 CTAGCCTTCTCACGGACAGCTGGCATCGTGTGAATGGCATCGAAGAGGTCGTCCTTCTCC 310 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||||| ||| || || || |||||||||||||| |||||||||||||| Sbjct 311 TTTGGGTCCTTGATGTATTGCTCAATCAGCAGCGAGTAGGTCTCAGAGTGGATGTTTTCC 370 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 ||||| || |||||||| || ||| Sbjct 371 ATGGCAATTTGGAAGCCGTAGAAG 394 >seq187632 Length=1708 Score = 116 bits (128), Expect = 6e-20 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| ||| || ||| | || ||||| ||| ||| Sbjct 799 TACTTGGTGACAGCCTTGGTGCCCTCGCTGACAGCATGCTTTGCAAGTTCTCCGGGCAGA 740 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || | | ||||||||||||||| || | | ||| || |||||| | || Sbjct 739 AGCAACCTGATGGCGGTCTGGATCTCTCGAGAACTGATGGTTGATTTCTTGTTGTAGTGC 680 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || |||||| | ||| ||| ||||||| |||| || || || || ||||| |||||| Sbjct 679 GCTAGGCGGGAAGACTCAGTGGCGATGCGTTCGAAGATATCATTCACGAACGAATTCATG 620 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | ||| | || || || ||||| || ||||| || || |||||||| Sbjct 619 ATACCCATGGCCTTGCTAGAAATACCGGTATCGGGATGAACCTGTTTAAGGACCTTGTA 561 >seq187631 Length=1733 Score = 116 bits (128), Expect = 6e-20 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| ||| || ||| | || ||||| ||| ||| Sbjct 799 TACTTGGTGACAGCCTTGGTGCCCTCGCTGACAGCATGCTTTGCAAGTTCTCCGGGCAGA 740 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || | | ||||||||||||||| || | | ||| || |||||| | || Sbjct 739 AGCAACCTGATGGCGGTCTGGATCTCTCGAGAACTGATGGTTGATTTCTTGTTGTAGTGC 680 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || |||||| | ||| ||| ||||||| |||| || || || || ||||| |||||| Sbjct 679 GCTAGGCGGGAAGACTCAGTGGCGATGCGTTCGAAGATATCATTCACGAACGAATTCATG 620 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | ||| | || || || ||||| || ||||| || || |||||||| Sbjct 619 ATACCCATGGCCTTGCTAGAAATACCGGTATCGGGATGAACCTGTTTAAGGACCTTGTA 561 >seq174589 Length=1165 Score = 116 bits (128), Expect = 6e-20 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| |||||||| ||||| ||| || ||| | || ||||| ||| ||| Sbjct 367 TACTTGGTGACAGCCTTGGTGCCCTCGCTGACAGCATGCTTTGCAAGTTCTCCGGGCAGA 426 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || | | ||||||||||||||| || | | ||| || |||||| | || Sbjct 427 AGCAACCTGATGGCGGTCTGGATCTCTCGAGAACTGATGGTTGATTTCTTGTTGTAGTGC 486 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 || |||||| | ||| ||| ||||||| |||| || || || || ||||| |||||| Sbjct 487 GCTAGGCGGGAAGACTCAGTGGCGATGCGTTCGAAGATATCATTCACGAACGAATTCATG 546 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | ||| | || || || ||||| || ||||| || || |||||||| Sbjct 547 ATACCCATGGCCTTGCTAGAAATACCGGTATCGGGATGAACCTGTTTAAGGACCTTGTA 605 >seq112139 Length=201 Score = 107 bits (118), Expect = 3e-17 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1485579 CTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC 1485638 |||||| | | || |||||| || |||||| ||||||| |||| ||||||||||| Sbjct 189 CTTGTTGTAGTGGGCAAGGCGGGAAGCTTCGGTGGCGATGCGCTCGAAGATGTCGTTGAC 130 Query 1485639 AAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTT 1485698 |||||||||||||| ||| | |||| ||||||| || ||||||||| || ||||| Sbjct 129 GAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCGGGGTGAACTTGCTT 70 Query 1485699 GAGCACCTTGTA 1485710 | ||||||||| Sbjct 69 CAACACCTTGTA 58 >seq142104 Length=1514 Score = 95.1 bits (104), Expect = 2e-13 Identities = 219/329 (67%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| |||||||| | || || ||| || || ||||| ||| | ||| Sbjct 675 ACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATCTTGCCCCTCTT 734 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || ||||| || |||||| ||| || ||||| ||||| || || || || ||||| Sbjct 735 TTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCCACAGCAGCAAA 794 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCC 794517 | | || | || ||| || ||| | || || | || |||||||| |||| ||| Sbjct 795 GGCAACTATCCTCTCACCATAAG-----ATGCTCTTTCTGGGTTGATCCAATTCAGGGCC 849 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 |||| || ||| | | || | |||| || || ||||| || || || | || Sbjct 850 CACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTGCTGTTTT 909 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || ||| ||||| | ||| || || || | || ||| | || |||||||| || Sbjct 910 TCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAGAGTGGATATTC 969 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || || ||||||||||| || || Sbjct 970 TCTATTGCTATTTGGAAGCCATAGAAACA 998 >seq139941 Length=1515 Score = 95.1 bits (104), Expect = 2e-13 Identities = 219/329 (67%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| |||||||| | || || ||| || || ||||| ||| | ||| Sbjct 840 ACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCATCTTGCCCCTCTT 781 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || ||||| || |||||| ||| || ||||| ||||| || || || || ||||| Sbjct 780 TTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTCCACAGCAGCAAA 721 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCC 794517 | | || | || ||| || ||| | || || | || |||||||| |||| ||| Sbjct 720 GGCAACTATCCTCTCACCATAAG-----ATGCTCTTTCTGGGTTGATCCAATTCAGGGCC 666 Query 794518 CACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTC 794577 |||| || ||| | | || | |||| || || ||||| || || || | || Sbjct 665 CACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTTGCTGTTTT 606 Query 794578 TCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 || ||| ||||| | ||| || || || | || ||| | || |||||||| || Sbjct 605 TCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAGAGTGGATATTC 546 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || || ||||||||||| || || Sbjct 545 TCTATTGCTATTTGGAAGCCATAGAAACA 517 >seq70487 Length=321 Score = 86.0 bits (94), Expect = 1e-10 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 794515 GCCCACTCTGCCTTTTTCCTCACC-GAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 794573 ||||||| || ||| |||| | | | |||| ||| | ||||| |||| ||||| Sbjct 53 GCCCACTTCGC-TTTCTCCTGAACTGCTGGCATTGTGGCAATGGCATTGAAGACATGGTC 111 Query 794574 CTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGAT 794633 ||||| | || || |||| ||| || || || || ||||||||||| |||||||| Sbjct 112 TTTCTCAGCTGGATCTTTGATGTACTGCTCAATCAGCAGAGAGTAGGTCTCGGAGTGGAT 171 Query 794634 GTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||||| ||||| || || |||||||| ||| Sbjct 172 GTTTTCCATGGCCATTTGAAAGCCATAGAAG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7889330657579292