Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_022920.1 Length=139738 Score E Sequences producing significant alignments: (Bits) Value seq2714 196 4e-45 seq246949 140 3e-28 >seq2714 Length=540 Score = 196 bits (216), Expect = 4e-45 Identities = 336/487 (69%), Gaps = 3/487 (1%) Strand=Plus/Plus Query 67913 AAAAAAGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATACCAAAACAATAAAGAAG 67972 |||||||| | |||||| ||| | || |||| ||||| ||| |||||| ||| Sbjct 3 AAAAAAGACTGGATAGATTACAAAGAAAAATATCAAAAAAATATAAAATGAATAAACAAG 62 Query 67973 GGAGTACGTTTGTCAAAACTTGTAATATTATAAAACTTGAAAAACAAATTAAACTCTTAC 68032 | | | ||| | |||||| ||||||||| ||| | ||||||||||||||||| | | Sbjct 63 GAAATTGTTTTATAAAAACTAATAATATTATTAAATTAGAAAAACAAATTAAACTTATTC 122 Query 68033 AACGAAGATTGTCTAACATCCGTAAAAATCATTTACATCAAACAACAACTTCTATTGTGA 68092 | ||| | | || || | || |||||| |||||||| ||| || || | | Sbjct 123 ATAGAAAGCTAGCAAATATAAGAAATAATCATATACATCAAGTAACTGCTAAAATAATTA 182 Query 68093 AAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAAAATA 68152 || ||||| ||| | || || |||||||| ||| ||||||| ||||||||||||| Sbjct 183 AATTAAAACCATATAGAGTGGTGATGGAAGATTTAAATATAAGTGGCATGATGAAAAATA 242 Query 68153 GACATCTAGCTAAAGCAATACAAAAACAGAGTTTTTATGAATTTAGAAGACAATTAGAAT 68212 ||| || | ||| || ||| |||| | ||||||||||||| ||||||| | ||| Sbjct 243 AGCATTTATCAAAAAGTATTCAAGAACAAAAATTTTATGAATTTATAAGACAAATGAAAT 302 Query 68213 ACAAGTGTAAAAGAAAAGGTATCGAACTTATTACTGCTGATAGGTTTTTCCCGTCAAGTA 68272 | || || || || || || || ||| |||||||| |||| || |||| Sbjct 303 ATAAATGCGAATTTAATAAAATTAAATTTGTTAAAGCTGATAGATTTTATCCAAGTAGTA 362 Query 68273 AAACATGTTCTAGTTGTGGAATTATTAATAAAAACTTAAAACTTTCAGATAGAGTATTTA 68332 ||| ||||||| ||||||||| | | || ||| | |||||||| ||||| || || Sbjct 363 AAAGATGTTCTTGTTGTGGAAATGTAAAAAAAGATTTAAAACTAAGTGATAGGAAATATA 422 Query 68333 ACTG---TGAGTGTGGATTTAGTATTGATAGAGACTTTAATGCTAGTGTTAATTTAGCTA 68389 | || ||| ||| | | | ||| ||||| || ||||||||| | ||| | | | Sbjct 423 AATGTGATGAATGTAAAATGATTATGGATAGGGATAAAAATGCTAGTATAAATCTTTCAA 482 Query 68390 ATTATAA 68396 | ||||| Sbjct 483 AATATAA 489 >seq246949 Length=325 Score = 140 bits (154), Expect = 3e-28 Identities = 217/310 (70%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 67951 AAATACCAAAACAATAAAGAAGGGAGTACGTTTGTCAAAACTTGTAATATTATAAAACTT 68010 ||||| ||| |||||| |||| | | ||| | |||||| ||||||||| ||| | Sbjct 316 AAATATAAAATGAATAAACAAGGAAATTGTTTTATAAAAACTAATAATATTATTAAATTA 257 Query 68011 GAAAAACAAATTAAACTCTTACAACGAAGATTGTCTAACATCCGTAAAAATCATTTACAT 68070 ||||||||||||||||| | || ||| | | || || | || |||||| ||||| Sbjct 256 GAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAAATATAAGAAATAATCATATACAT 197 Query 68071 CAAACAACAACTTCTATTGTGAAAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAAT 68130 ||| ||| || || | ||| ||||| ||| | || || |||||||| ||| Sbjct 196 CAAGTAACTGCTAAAATAATTAAATTAAAACCATATAGAGTGGTGATGGAAGATTTAAAT 137 Query 68131 GTAAGTGGTATGATGAAAAATAGACATCTAGCTAAAGCAATACAAAAACAGAGTTTTTAT 68190 ||||||| ||||||||||||| ||| || | ||| || ||| |||| | |||||| Sbjct 136 ATAAGTGGCATGATGAAAAATAAGCATTTATCAAAAAGTATTCAAGAACAAAAATTTTAT 77 Query 68191 GAATTTAGAAGACAATTAGAATACAAGTGTAAAAGAAAAGGTATCGAACTTATTACTGCT 68250 ||||||| ||||||| | |||| || || || || || || || ||| ||| Sbjct 76 GAATTTATAAGACAAATGAAATATAAATGCGAATTTAATAAAATTAAATTTGTTAAAGCT 17 Query 68251 GATAGGTTTT 68260 ||||| |||| Sbjct 16 GATAGATTTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445619699778240