Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq9941 104 2e-17 seq119666 91.5 1e-13 seq119664 91.5 1e-13 seq71855 91.5 1e-13 seq143705 87.8 1e-12 seq130988 84.2 2e-11 seq149515 82.4 6e-11 seq119668 82.4 6e-11 >seq9941 Length=214 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 |||||| || ||||| || | ||| || |||||| | || |||| |||||| || Sbjct 51 AAGATTCAAGACAAAGAGGGAATTCCCCCTGACCAGCAGCGTCTAATTTTTGCGGGAAAG 110 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 ||||||||||||| || || || | ||||||||||||||||||||||| |||||||| Sbjct 111 CAGCTGGAGGACGGCAGGACTCTGTCTGACTACAACATTCAAAAGGAGTCGACGTTGCAT 170 Query 107760 ATGGTGTTGAGATTGCGAGGGGGAA 107784 | ||| | || |||| || |||| Sbjct 171 CTCGTGCTCCGACTGCGTGGTGGAA 195 >seq119666 Length=455 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || | |||||||| || || || | ||| |||||| Sbjct 37 ATGCAGATTTTCGTTAAGACACTGACAGGCAAGACGATCACACTGGAAGTTGAGGCTTCA 96 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || || || | || || || Sbjct 97 GACACCATCGAAAACGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 156 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| ||||||| |||| || | ||||||||| Sbjct 157 CAGCGCCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGGCGAACACTGTCTGACTACAAC 216 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| ||||||||| |||||||| Sbjct 217 ATTCAGAAGGAGTCCACGTTGCACTTGGTGTTG 249 >seq119664 Length=481 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || | |||||||| || || || | ||| |||||| Sbjct 63 ATGCAGATTTTCGTTAAGACACTGACAGGCAAGACGATCACACTGGAAGTTGAGGCTTCA 122 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||| || || || || | || || || Sbjct 123 GACACCATCGAAAACGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 182 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| ||||||| |||| || | ||||||||| Sbjct 183 CAGCGCCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGGCGAACACTGTCTGACTACAAC 242 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| ||||||||| |||||||| Sbjct 243 ATTCAGAAGGAGTCCACGTTGCACTTGGTGTTG 275 >seq71855 Length=408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||| ||| |||| ||||| | Sbjct 245 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTCGACGTTGAGGCAAGT 186 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| ||||| || || | || |||||| Sbjct 185 GACACCATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCTGATCAG 126 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||| ||||||| | | || | | ||||||||| Sbjct 125 CAGCGCCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCAGACTACAAC 66 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| ||||||||| |||||||| Sbjct 65 ATTCAGAAGGAGTCCACGTTGCACTTGGTGTTG 33 >seq143705 Length=477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| |||||||| | || ||||||||||||||| | ||| || || || Sbjct 437 ATGCAGATTTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 378 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | || || |||||| || || |||||| | ||| || || Sbjct 377 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 318 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || |||||| ||||||| | || || ||||| || Sbjct 317 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 258 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || || ||||||||||| | ||| | ||||| | |||| || ||| Sbjct 257 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACGTCTGCGTGGTGGA 210 >seq130988 Length=550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || ||| | || || |||||||| || | || ||| | | Sbjct 99 AATGCAAATTTTCGTGAAGACTCTGACCGGAAAAACCATCACTCTTGAGGTGGAACCAAG 158 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| ||| | | || || ||||| || |||||||| | || || || Sbjct 159 CGACACTATCGACAACGTGAAGACCAAGATCCAGGACAAAGAAGGTATCCCTCCAGACCA 218 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || |||||||| || | | ||| || |||||||| Sbjct 219 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTGAGCGACTACAA 278 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || | || ||||| Sbjct 279 CATTCAGAAGGAGTCAACCCTCCATCTGGTG 309 >seq149515 Length=449 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || |||||||| | || ||||||||||||||| | ||| || || || Sbjct 17 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAAACCATTACCCTGGAAGTAGAACCTAGC 76 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| | ||| | || || |||||| || || |||||| | ||| || || Sbjct 77 GATTCCATCGAGAATGTGAAGACAAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAA 136 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || |||||| ||||||| | || || ||||| || Sbjct 137 CAGAGGCTGATCTTCGCTGGAAAACAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAT 196 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || || ||||||||||| | ||| | ||||| | |||| || ||| Sbjct 197 ATCCAGAAGGAGTCTACCCTTCACTTAGTGTTACGTCTGCGTGGTGGA 244 >seq119668 Length=339 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| ||||| ||| |||| ||||| | Sbjct 88 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGCCTCC 147 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | || || |||||| || || || ||| | ||| || ||| Sbjct 148 GACACTATCGAAAACGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCCCCAGACCAG 207 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || || ||||||||| Sbjct 208 CAGCGTCTCATCTTCGCTGGGAAGCAGCTCGAGGACGGACGCACTCTGAGTGACTACAAC 267 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||||||||| || | ||| ||||| Sbjct 268 ATCCAAAAGGAGTCCACACTTCACTTGGTG 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397646752200292