Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq99092 199 6e-46 seq131321 181 2e-40 seq99093 179 6e-40 seq77635 179 6e-40 seq127998 113 7e-20 seq71856 100 4e-16 seq71855 100 4e-16 seq98341 96.9 5e-15 seq95674 89.7 8e-13 seq143707 84.2 3e-11 >seq99092 Length=231 Score = 199 bits (220), Expect = 6e-46 Identities = 178/221 (81%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 146052 TTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAA 146111 |||||||| ||||||||||| | ||||| ||| || ||||| ||||||||||||||| Sbjct 1 TTAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAA 60 Query 146112 AATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGT 146171 ||||| ||| ||||||||| || ||||| || ||||||||| | || ||||||||| Sbjct 61 GCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGT 120 Query 146172 AAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATC 146231 ||||||||||| ||| | || ||| | ||||||||||| ||||||||||| || | Sbjct 121 AAACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCAACATTG 180 Query 146232 CATTTAGTATTACGATTAAGAGGAGGT-AAAT--AAATATT 146269 |||||||||||||| |||||||| ||| ||| ||||||| Sbjct 181 CATTTAGTATTACGTTTAAGAGGTGGTGCAATGCAAATATT 221 >seq131321 Length=300 Score = 181 bits (200), Expect = 2e-40 Identities = 151/185 (82%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||||||||| || ||||||||||| | ||||| ||| || | Sbjct 185 TGCAAATATTTGTTAAAACATTAACTGGTAAAACAATTACATTAGATGTTGAAGCAAATG 126 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || |||||||||||| ||||||||| ||||||||| || ||||| || |||| Sbjct 125 ATACAATACAAAATGTAAAAGCAAAAATACAAGATAAAGAAGGAATACCACCAGAACAAC 66 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || |||||||||||||||||||| ||| |||||| ||| | |||||||||| Sbjct 65 AAAGATTAATATTTGCAGGTAAACAATTAGAGGATGGTAGAACATTATCTGATTATAATA 6 Query 146212 TACAA 146216 | ||| Sbjct 5 TTCAA 1 Score = 102 bits (112), Expect = 1e-16 Identities = 99/125 (79%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 146148 CAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTAT 146207 ||||||||| | ||||| || || ||||||||||| ||| | || || | |||||| Sbjct 300 CAACAAAGATTGATTTTCGCTGGAAAACAATTAGAAGATGGACGTACTTTGAGTGATTAT 241 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT-AAAT--AA 146264 ||||| ||||||||||| || | |||||||||||| |||||||||| ||| ||| || Sbjct 240 AATATTCAAAAAGAATCAACATTACATTTAGTATTAAGATTAAGAGGTGGTGCAATGCAA 181 Query 146265 ATATT 146269 ||||| Sbjct 180 ATATT 176 >seq99093 Length=221 Score = 179 bits (198), Expect = 6e-40 Identities = 155/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 146052 TTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAA 146111 |||||||| ||||||||||| | ||||| ||| || ||||| ||||||||||||||| Sbjct 1 TTAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAA 60 Query 146112 AATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGT 146171 ||||| ||| ||||||||| || ||||| || ||||||||| | || ||||||||| Sbjct 61 GCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGT 120 Query 146172 AAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATC 146231 ||||||||||| ||| | || ||| | ||||||||||| ||||||||||||||| | Sbjct 121 AAACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCGACTCTT 180 Query 146232 CATTTAGTATTA 146243 || || |||||| Sbjct 181 CACTTGGTATTA 192 >seq77635 Length=207 Score = 179 bits (198), Expect = 6e-40 Identities = 164/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 146033 GCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGA 146092 ||||||||| | ||||||||||| ||||||||||| ||| | || || |||| || || Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 146093 TACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACA 146152 ||| || |||||||||||| ||||| ||| ||||||||| ||||| || || ||||| Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 146153 AAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATAT 146212 | || | ||||||||||| ||||||||||| ||| | | || ||| | ||||| || || Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCGTACATTATCTGATTACAACAT 28 Query 146213 ACAAAAAGAATCGACTATCCATTTAGT 146239 ||||||||||| || | |||||||| Sbjct 27 CCAAAAAGAATCCACATTACATTTAGT 1 >seq127998 Length=685 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | ||||| ||||| || || |||| || |||| | Sbjct 659 TGCAGATCTTTGTGAAAACCCTGACAGGGAAAACTATCACCCTTGAGGTGGAACCATCGG 600 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | || ||||||| |||| ||| || || ||| ||||| ||||| || ||||||| Sbjct 599 ATTCCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAAC 540 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||||||||||| || ||| | || ||| ||||| | | ||||| || | Sbjct 539 AGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACAACA 480 Query 146212 TACAAAAAGAATCGACT 146228 |||| |||||||| ||| Sbjct 479 TACAGAAAGAATCCACT 463 >seq71856 Length=271 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| || || || || |||||| | ||||| ||||| ||||| ||| |||| ||| Sbjct 240 AAGGAAGGTATCCCCCCTGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTAGAGGAT 181 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 || || | | |||||||||||||| || || ||||| | ||||| ||||| || Sbjct 180 GGAAGGACCCTGTCTGATTATAATATACAGAAGGAGTCGACGCTGCATTTGGTATTGAGA 121 Query 146247 TTAAGAGGAGGTA 146259 ||||||||||||| Sbjct 120 TTAAGAGGAGGTA 108 >seq71855 Length=408 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| || || || || |||||| | ||||| ||||| ||||| ||| |||| ||| Sbjct 377 AAGGAAGGTATCCCCCCTGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTAGAGGAT 318 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 || || | | |||||||||||||| || || ||||| | ||||| ||||| || Sbjct 317 GGAAGGACCCTGTCTGATTATAATATACAGAAGGAGTCGACGCTGCATTTGGTATTGAGA 258 Query 146247 TTAAGAGGAGGTA 146259 ||||||||||||| Sbjct 257 TTAAGAGGAGGTA 245 >seq98341 Length=429 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 146101 AAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCA 146160 ||||||| |||| ||| || || ||| ||||| ||||| || |||||||| |||||| Sbjct 18 AAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAGCGACTCA 77 Query 146161 TTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAG 146220 |||||||||| || ||| | || ||| ||||| | | ||||| || ||||| |||| Sbjct 78 TTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACAACATACAGAAAG 137 Query 146221 AATCGACT 146228 |||| ||| Sbjct 138 AATCCACT 145 >seq95674 Length=384 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || || |||| ||| | || || || ||||| ||| | || || || | || | Sbjct 54 TGCAGATCTTTGTAAAGACACTCACGGGGAAGACAATCACTTTGGAGGTTGAGCCATCA- 112 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| |||||||||| || || ||| || || || || ||||| |||||| Sbjct 113 GACACCATTGAAAATGTAAAGGCGAAGATCCAAGACAAGGAGGGGATCCCACCAGATCAA 172 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || ||||||||||| || || | || ||| | ||||| | ||||| || Sbjct 173 CAGAGGCTGATTTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACGTTGTCTGATTACAAC 232 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||| ||||| ||| Sbjct 233 ATTCAAAAGGAATCCACT 250 >seq143707 Length=308 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || || || || ||| |||| || |||| | || Sbjct 254 TGCAGATCTTCGTGAAGACTCTGACCGGTAAGACTATCACTCTTGAAGTTGAACCAAGCG 195 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| || | || || ||| ||||||||||| || |||||||||| Sbjct 194 ACAGTATCGAGAATGTGAAGACGAAGATCCAAGACAAAGAAGGCATCCCGCCCGATCAAC 135 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | |||||||| || || |||||| | || ||| | || | | || || || | Sbjct 134 AGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGACTACAACA 75 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || ||| | || | || | || || ||||| || Sbjct 74 TTCAGAAAGAGTCCACTCTTCACCTTGTTCTTCGCTTGAGAGGTGG 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783679873601760