Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_023573.1 Length=142094 Score E Sequences producing significant alignments: (Bits) Value seq2714 214 2e-50 seq246949 152 5e-32 >seq2714 Length=540 Score = 214 bits (236), Expect = 2e-50 Identities = 340/487 (70%), Gaps = 3/487 (1%) Strand=Plus/Plus Query 63507 AAAAAAGATTACGTAGATTGCAACGTAAGGTATCTCGTAAATACCAAAACAATAAAGAAG 63566 |||||||| | |||||| ||| | || |||| ||||| ||| |||||| ||| Sbjct 3 AAAAAAGACTGGATAGATTACAAAGAAAAATATCAAAAAAATATAAAATGAATAAACAAG 62 Query 63567 GGAGTACGTTTGTCAAAACTTGTAATATTATAAAACTTGAAAAACAAATTAAACTCCTAC 63626 | | | ||| | |||||| ||||||||| ||| | ||||||||||||||||| | | Sbjct 63 GAAATTGTTTTATAAAAACTAATAATATTATTAAATTAGAAAAACAAATTAAACTTATTC 122 Query 63627 AACGAAGATTGTCTAATATCCGTAAAAATCATTTACATCAAACAACAACTTCTATCGTGA 63686 | ||| | | ||||| | || |||||| |||||||| ||| || || | | Sbjct 123 ATAGAAAGCTAGCAAATATAAGAAATAATCATATACATCAAGTAACTGCTAAAATAATTA 182 Query 63687 AAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAATGTAAGTGGTATGATGAAAAATA 63746 || ||||| ||| | || || |||||||| ||| ||||||| ||||||||||||| Sbjct 183 AATTAAAACCATATAGAGTGGTGATGGAAGATTTAAATATAAGTGGCATGATGAAAAATA 242 Query 63747 GACATTTAGCTAAAGCAATACAAAAACAAGGTTTCTATGAATTTAGAAGACAATTAGAAT 63806 |||||| | ||| || ||| ||||| || |||||||||| ||||||| | ||| Sbjct 243 AGCATTTATCAAAAAGTATTCAAGAACAAAAATTTTATGAATTTATAAGACAAATGAAAT 302 Query 63807 ATAAGTGTAAAAGAAAAGGTATTGAATTAGTTATAGTAAATAGATTCTTTCCTTCTAGTA 63866 |||| || || || ||| |||| |||| || ||||||| | ||| ||||| Sbjct 303 ATAAATGCGAATTTAATAAAATTAAATTTGTTAAAGCTGATAGATTTTATCCAAGTAGTA 362 Query 63867 AAACATGTTCTAGTTGTGGAATTATTAATAAAAACTTAAAACTTTCAGATAGAGTATTTA 63926 ||| ||||||| ||||||||| | | || ||| | |||||||| ||||| || || Sbjct 363 AAAGATGTTCTTGTTGTGGAAATGTAAAAAAAGATTTAAAACTAAGTGATAGGAAATATA 422 Query 63927 ACTG---TGAGTGTGGATTTAGTATTGATAGAGACTTTAATGCTAGTGTTAATTTAGCTA 63983 | || ||| ||| | | | ||| ||||| || ||||||||| | ||| | | | Sbjct 423 AATGTGATGAATGTAAAATGATTATGGATAGGGATAAAAATGCTAGTATAAATCTTTCAA 482 Query 63984 ATTATAA 63990 | ||||| Sbjct 483 AATATAA 489 >seq246949 Length=325 Score = 152 bits (168), Expect = 5e-32 Identities = 222/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 63545 AAATACCAAAACAATAAAGAAGGGAGTACGTTTGTCAAAACTTGTAATATTATAAAACTT 63604 ||||| ||| |||||| |||| | | ||| | |||||| ||||||||| ||| | Sbjct 316 AAATATAAAATGAATAAACAAGGAAATTGTTTTATAAAAACTAATAATATTATTAAATTA 257 Query 63605 GAAAAACAAATTAAACTCCTACAACGAAGATTGTCTAATATCCGTAAAAATCATTTACAT 63664 ||||||||||||||||| | || ||| | | ||||| | || |||||| ||||| Sbjct 256 GAAAAACAAATTAAACTTATTCATAGAAAGCTAGCAAATATAAGAAATAATCATATACAT 197 Query 63665 CAAACAACAACTTCTATCGTGAAAACCAAACCTAGAAGAATTGTTATAGAAGATTTGAAT 63724 ||| ||| || || | ||| ||||| ||| | || || |||||||| ||| Sbjct 196 CAAGTAACTGCTAAAATAATTAAATTAAAACCATATAGAGTGGTGATGGAAGATTTAAAT 137 Query 63725 GTAAGTGGTATGATGAAAAATAGACATTTAGCTAAAGCAATACAAAAACAAGGTTTCTAT 63784 ||||||| ||||||||||||| |||||| | ||| || ||| ||||| || ||| Sbjct 136 ATAAGTGGCATGATGAAAAATAAGCATTTATCAAAAAGTATTCAAGAACAAAAATTTTAT 77 Query 63785 GAATTTAGAAGACAATTAGAATATAAGTGTAAAAGAAAAGGTATTGAATTAGTTATAGTA 63844 ||||||| ||||||| | ||||||| || || || ||| |||| |||| || Sbjct 76 GAATTTATAAGACAAATGAAATATAAATGCGAATTTAATAAAATTAAATTTGTTAAAGCT 17 Query 63845 AATAGATTCTTTCC 63858 ||||||| | ||| Sbjct 16 GATAGATTTTATCC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453135054419520