Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq174639 293 3e-74 seq75038 266 4e-66 seq12672 228 9e-55 seq75039 212 7e-50 seq25321 190 2e-43 seq174640 172 6e-38 seq25705 159 4e-34 seq251946 129 6e-25 seq23841 100 3e-16 >seq174639 Length=919 Score = 293 bits (324), Expect = 3e-74 Identities = 501/723 (69%), Gaps = 8/723 (1%) Strand=Plus/Plus Query 157165 GCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGC 157224 |||||| | || ||||| || || || | |||||||| ||||| || || | |||||| Sbjct 192 GCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGC 251 Query 157225 AACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTAC 157284 || ||||| || | || || || | || ||| || || || || |||| ||||| Sbjct 252 AATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGGGTTCATTTCTAT 311 Query 157285 CCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTG 157344 || | ||||| || | |||||||||| | || || |||||| | | ||| | Sbjct 312 CCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGTACATATCAATTT 371 Query 157345 GTAGTCTTTCACTTCCTGATCGGCATCTATGCCTAT---ATGGGACGTGAGTGGGAACTT 157401 ||||| |||| || || | || | ||| | | ||||| | || |||||| | Sbjct 372 GTAGTACTTCATTTTATGCTTGGTGT---TGCTTGTTGGATGGGTAGAGAATGGGAATTC 428 Query 157402 TCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCT 157461 || | | ||||||||| | || ||||| | ||| || | ||| ||||| || | || Sbjct 429 AGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCTGTTGTAGCA 488 Query 157462 GCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCT 157521 || ||||||||| | || ||||| | ||||||| | || ||||||| |||||| Sbjct 489 GCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTTTCCGATGGAATGCCT 548 Query 157522 CTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTT 157581 | || || ||| |||||||| | |||||| || ||||| ||||| || || ||| | Sbjct 549 TTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACATAACATTTTA 608 Query 157582 ATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCT 157641 |||||||| ||||| || || || || ||||| ||||| || || || || || ||| Sbjct 609 ATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATTATTTAGTGCA 668 Query 157642 ATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAG 157701 ||||| || | ||||| || || ||| || ||||| | | | | | | | Sbjct 669 ATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACTGCAGGAG-ATATTAGCCT 727 Query 157702 AACTAT-GGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGG 157760 || | | || || ||||| ||||||||||| || || || | ||| || || || || Sbjct 728 AAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGG 787 Query 157761 TTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTT 157820 ||| || ||| | || || || ||||| ||||| ||||| ||| | ||||||||||| Sbjct 788 TTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTT 847 Query 157821 CTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 157880 |||||| || || ||||| ||| | || || |||||||| ||||| || ||||| || || Sbjct 848 CTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGAGTAAGTACAAT 907 Query 157881 GGC 157883 ||| Sbjct 908 GGC 910 >seq75038 Length=481 Score = 266 bits (294), Expect = 4e-66 Identities = 330/452 (73%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 157409 GTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTG 157468 || |||| |||||||| ||||| ||| || || || | ||||| || ||||||| || Sbjct 481 GTCTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTG 422 Query 157469 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 157528 | ||||| | | || || | |||||||| || || || |||| |||||| | || | Sbjct 421 CGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAA 362 Query 157529 TCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATC 157588 | || || ||||| || | |||| | || ||||| |||||||| |||||| | ||||||| Sbjct 361 TTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATC 302 Query 157589 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 157648 | || || ||| | || || ||||| || || ||||| || || || ||||||||||| | Sbjct 301 CTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATG 242 Query 157649 GAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATG 157708 | | |||||||| || | |||||||||||||||||| || ||| || || Sbjct 241 GTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTG 182 Query 157709 GTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCG 157768 |||| | ||||| ||||||||||| || || ||||| || || ||||| ||||| || | Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 157769 GTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCG 157828 |||| | || |||||||| ||||| ||||| ||| | | | || |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 157829 CCGCATGGCCTGTTGTCGGCATCTGGTTCACT 157860 | |||||||| || || || ||||||||| Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACT 30 >seq12672 Length=424 Score = 228 bits (252), Expect = 9e-55 Identities = 272/369 (74%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 157492 GGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 157551 |||||||| || || || |||| |||||| | || || || || ||||| || | |||| Sbjct 27 GGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTCAATTTTATG 86 Query 157552 CTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 157611 | || ||||| |||||||| |||||| | |||||||| || || ||| | || || ||| Sbjct 87 ATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTAGGTGTAGCT 146 Query 157612 GGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTT 157671 || || || ||||| || || || ||||||||||| || | |||||||| || | Sbjct 147 GGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACTTCATCATTA 206 Query 157672 GTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 157731 |||||||||||||||||| || ||| || |||||| | ||||| ||||||||| Sbjct 207 ATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCGGACAAGAAGAA 266 Query 157732 GAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCT 157791 || || || ||||| || || ||||| ||||| || ||||| | || |||||||| ||| Sbjct 267 GAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTCCAATATGCT 326 Query 157792 TCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATC 157851 || ||||| ||| | | | || |||||| | || |||||||| || || || Sbjct 327 TCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTAGTTGGAATT 386 Query 157852 TGGTTCACT 157860 ||||||||| Sbjct 387 TGGTTCACT 395 >seq75039 Length=421 Score = 212 bits (234), Expect = 7e-50 Identities = 261/354 (74%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 157078 AACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACT 157137 ||||| || ||| |||||||||| || || ||||||||||| || | |||| || Sbjct 354 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 295 Query 157138 ATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGA 157196 |||| || ||| |||| || || || |||||||| || ||||| || || ||||| || Sbjct 294 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGA 236 Query 157197 ACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTC 157256 ||| ||| ||||||| | | ||||| ||||| || || | || || || ||||| | Sbjct 235 ACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTAC 176 Query 157257 TTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTG 157316 |||||||||||| ||| | || || || || || |||||||| || || | ||||| || Sbjct 175 TTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATG 116 Query 157317 GCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGC 157376 ||| || || ||||| |||| ||| | | || | ||||| | | || || | | Sbjct 115 GCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTG 56 Query 157377 CTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGAT 157430 ||||||||||||||| ||||||||||| | ||| |||| |||||||| ||||| Sbjct 55 CTATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGAT 2 >seq25321 Length=478 Score = 190 bits (210), Expect = 2e-43 Identities = 238/324 (73%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 157078 AACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGCAGCAACT 157137 ||||| || ||| |||||||||| || || ||||||||||| || | |||| || Sbjct 156 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTAC- 214 Query 157138 ATCTG-CTTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGA 157196 |||| || ||| |||| || || || |||||||| |||||||| || || ||||| || Sbjct 215 CTCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTGA 274 Query 157197 ACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTC 157256 ||| ||| ||||||| | | ||||| ||||| || || | || || || ||||| | Sbjct 275 ACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTAC 334 Query 157257 TTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTG 157316 |||||||||||| ||| | || || || || || |||||||| || || | ||||| || Sbjct 335 TTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATG 394 Query 157317 GCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGC 157376 ||| || || ||||| |||| ||| | | || | ||||| | | || || | | Sbjct 395 GCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTG 454 Query 157377 CTATATGGGACGTGAGTGGGAACT 157400 ||||||||||||||| |||||||| Sbjct 455 CTATATGGGACGTGAATGGGAACT 478 >seq174640 Length=289 Score = 172 bits (190), Expect = 6e-38 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 157707 TGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTT 157766 ||| || ||||| ||||||||||| || || || | ||| || || || ||||| || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 157767 CGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCT 157826 ||| | || || || ||||| ||||| ||||| ||| | ||||||||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 157827 CGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 157886 || || ||||| ||| | || || |||||||| ||||| || ||||| || ||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 157887 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 157926 |||| | || ||||| ||||||||||| |||||||| ||| Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGAT 37 >seq25705 Length=358 Score = 159 bits (176), Expect = 4e-34 Identities = 197/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 159111 CTTCGCCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTC 159170 || || ||||||||| | ||||| || | || | || || ||||| |||| ||| Sbjct 302 CTACGTCAGTTTGAAATAGCACGACTAGTTTTAATTAGACCTTATAATGCACTTGCATTC 243 Query 159171 TCTGGTCCTATTGCTGTTTTTGTCAGC-GTCTTCCTTATCTACCCACTTGGTCAGTCCAG 159229 || || || || || |||| | || | |||||||| || || ||||||||||| || || Sbjct 242 TCAGGACCAATAGCAGTTTATA-CATCTGTCTTCCTAATTTATCCACTTGGTCAATCTAG 184 Query 159230 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACA 159289 ||||| || || || ||||||||| || || || ||| | |||||| | ||||| || Sbjct 183 CTGGTTCTTTGCACCAAGCTTTGGGGTTGCTGCTATCTTCCGATTCCTATTATTCCTTCA 124 Query 159290 AGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGG 159349 ||| || || ||||||||| |||| || || || |||||||| || ||||| || | || Sbjct 123 AGGTTTTCATAATTGGACATTAAATCCTTTTCACATGATGGGTGTAGCTGGAATATTGGG 64 Query 159350 TGGAGCACTTCTATCTGCTATTCATGG 159376 || ||| | ||||| ||||| ||||| Sbjct 63 AGGTGCATTACTATCAGCTATCCATGG 37 >seq251946 Length=233 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 157271 GTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTG 157330 || ||||||| || || || |||||||| ||||| | ||||| ||| | || || |||| Sbjct 233 GTATTCACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTG 174 Query 157331 GTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTG 157390 | |||| || || | || | || || | | || ||| | ||||| || |||| Sbjct 173 GCCCTTATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTG 114 Query 157391 AGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCAC 157450 |||||||||| ||| |||||||||||||| || ||||||| |||||| | | |||||| Sbjct 113 AGTGGGAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCAC 54 Query 157451 CAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGG 157499 | || || || || ||||| || || || ||||| | |||||||| Sbjct 53 CTGTAGCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 >seq23841 Length=230 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 159442 CAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 159501 ||| |||| || || |||||||| ||||| || || || || || ||||| ||| | | Sbjct 23 CAAGTCAACCAGAAGAAACTTATTCAATGGTTACAGCTAATCGTTTTTGGTCTCAGGTAT 82 Query 159502 TCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTA 159561 | || | || || || |||||| | |||||||||||||| ||| | ||||| ||| | Sbjct 83 TTGGTGTAGCCTTCTCAAACAAGAGATGGCTTCATTTCTTCATGCTATTTGTACCTCTAG 142 Query 159562 TGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACG 159621 ||| | |||||||| ||||| || ||||| | || | ||||| | ||||| | Sbjct 143 CAGGTATGTGGACATCTTCAATTGGTATCATTGGATTAGCATTTAATCTAAGAGCTTATG 202 Query 159622 ATTTCGTGAGTCAAGAGATCAGAGCAGC 159649 |||| | |||||| | | |||||| Sbjct 203 ATTTTATTTCTCAAGAATTGAAAGCAGC 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543548981394240