Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq99093 98.7 2e-15 seq99092 95.1 2e-14 seq131321 89.7 9e-13 >seq99093 Length=221 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/139 (75%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || |||||||||||||||| || | | |||||||| Sbjct 179 AGAGTCGATTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAATTGTTTA 120 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| |||| ||||||||| |||| ||||| |||| ||||||||||| |||||| Sbjct 119 CCTGCAAATATTAATCTTTGTTGTTCTGGTGGTATTCCTTCTTTATCTTGAATTTTTGCT 60 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||||| ||| |||| Sbjct 59 TTTACATTTTGAATTGTAT 41 >seq99092 Length=231 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/132 (75%), Gaps = 11/132 (8%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||| || || |||||||||||||||| || | | |||||||| ||| Sbjct 172 ATTCTTTTTGAATATTATAATCAGATAATGTACGTCCATCTTCTAATTGTTTACCTGCAA 113 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | |||| ||||||||| |||| ||||| |||| ||||||||||| |||||||||| || Sbjct 112 ATATTAATCTTTGTTGTTCTGGTGGTATTCCTTCTTTATCTTGAATTTTTGCTTTTACAT 53 Query 81760 TTTCAATCGTAT 81771 ||| ||| |||| Sbjct 52 TTTGAATTGTAT 41 >seq131321 Length=300 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/124 (75%), Gaps = 11/124 (9%) Strand=Plus/Plus Query 81659 TGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAAAGATTAGT 81707 || |||||||||||||||| ||||||| || ||||| |||| |||| | Sbjct 2 TGAATATTATAATCAGATAATGTTCTACCATCCTCTAATTGTTTACCTGCAAATATTAAT 61 Query 81708 CTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATATTTTCAATC 81767 |||||||| |||| ||||| |||| |||||||| || |||||||||| ||||| || Sbjct 62 CTTTGTTGTTCTGGTGGTATTCCTTCTTTATCTTGTATTTTTGCTTTTACATTTTGTATT 121 Query 81768 GTAT 81771 |||| Sbjct 122 GTAT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900553845886080