Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq71539 93.3 6e-14 seq71538 93.3 6e-14 seq71537 93.3 6e-14 seq71536 93.3 6e-14 seq71535 93.3 6e-14 >seq71539 Length=766 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 137 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 195 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 196 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 255 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 256 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 315 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 316 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 375 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 376 GTTCCCATTCTATGA 390 >seq71538 Length=1115 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 137 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 195 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 196 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 255 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 256 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 315 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 316 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 375 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 376 GTTCCCATTCTATGA 390 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 987 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 929 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 928 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 869 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 868 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 809 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 808 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 749 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 748 GTTCCCATTCTATGA 734 >seq71537 Length=1373 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 137 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 195 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 196 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 255 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 256 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 315 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 316 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 375 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 376 GTTCCCATTCTATGA 390 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 987 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 929 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 928 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 869 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 868 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 809 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 808 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 749 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 748 GTTCCCATTCTATGA 734 >seq71536 Length=1756 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 1628 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 1570 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 1569 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 1510 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 1509 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 1450 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 1449 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 1390 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 1389 GTTCCCATTCTATGA 1375 >seq71535 Length=2014 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 140436 AATATTGTTCACCGAGACATTAAACTCGGAAACATCATTTATGACACAAAGTTAAAAACT 140495 || || |||||||||||| | ||||| || || || | ||| ||| |||| Sbjct 1628 AACATAGTTCACCGAGACTTAAAACTTGGCAATAT-TGTGCTGAATAGAAGCACAAAAAG 1570 Query 140496 AGTAA-ACTATCTAATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAA 140554 | ||| | || | |||||||| | || |||||| | | | || || ||| | || || Sbjct 1569 AATAACAATAACAAATTTTTGCCTGGGGAAACACTTGATACGAGACAATGATTTGTTGAA 1510 Query 140555 AGATCAACGCGGGTCTCCCGCATATATTTCTCCGGATGTTATCAGCGGTAAACCATATTT 140614 ||| || || || ||| || |||||| ||| ||||| | || || ||||| | Sbjct 1509 AGACCAGCGAGGCAGTCCAGCTTATATTAGTCCAGATGTCTTAAGTGGGGCTCCATACTC 1450 Query 140615 AGGTAAACCGTCTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCA 140674 ||| ||| | ||| |||||||| ||||| || ||||| |||||||||| ||| || Sbjct 1449 AGGGAAAGCAAGTGACATGTGGGCTCTTGGTGTTGTCTTGTACACCATGTTGTATGGACA 1390 Query 140675 ATTTCCATTTTATGA 140689 || ||||| ||||| Sbjct 1389 GTTCCCATTCTATGA 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702353911556160