Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq187602 178 3e-39 seq187600 178 3e-39 seq187601 176 1e-38 >seq187602 Length=2693 Score = 178 bits (196), Expect = 3e-39 Identities = 326/477 (68%), Gaps = 3/477 (1%) Strand=Plus/Plus Query 110682 GGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG- 110740 || || || |||||||| | || | ||| | ||||||| ||||| | ||||| || Sbjct 589 GGTCTGGTACCAATGTTGCGTGTTTACAATGCGACTGCAAGGTATGTCGACCAAGGAGGC 648 Query 110741 --TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAA 110798 ||||||| || | |||||||| || | ||||| |||||| || || ||||| Sbjct 649 AATAAGAGACCAGGTGCCTTTGCTATATACTTGGAACCATGGCATAGTGACATCTTTGAT 708 Query 110799 TTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTAT 110858 ||||| || | | || || |||| |||||||| | || ||||| || || | | Sbjct 709 TTCTTGGACTTGAGGAAGAACACAGGAAAAGAAGAACAGCGTGCTCGTGACTTGTTCTTT 768 Query 110859 GCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTT 110918 || |||||||| | ||| | || |||| ||||| | |||| |||||||| ||| Sbjct 769 GCTTTGTGGATTCCTGATCTCTTTATGAGGCGTGTGGAGAGTGATGGAATGTGGTCACTT 828 Query 110919 ATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT 110978 ||||||||| || | ||||||||| || | ||| ||| ||||| | ||| Sbjct 829 ATGTGTCCTAATGAGTGCCCTGGTCTACAGGACTGCTGGGGAGAAGCTTTTGACAAGCTT 888 Query 110979 TACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGG 111038 || |||| ||||| || |||| ||||| ||| |||||| ||||||| |||| ||| Sbjct 889 TATGAAAGCTATGAGGAACAAGGAAAGTTCCGCCGACAAATCAAAGCTCAAAAACTGTGG 948 Query 111039 TTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCAT 111098 ||| |||| | ||| |||| ||||| || ||||| || || || || |||||| | Sbjct 949 TTCGCAATCATGGAAGCACAGACAGAAACAGGCACTCCATACATGTTATACAAAGATGCT 1008 Query 111099 ATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || | || ||||||| |||| | ||||| || || | || ||| | ||| Sbjct 1009 TGCAACAGAAAGAGTAATCAACAGAATGTTGGAACCATCAAATGCAGCAATCTTTGC 1065 Score = 120 bits (132), Expect = 7e-22 Identities = 307/454 (68%), Gaps = 15/454 (3%) Strand=Plus/Plus Query 113000 AAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAA 113059 |||| | || |||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 1569 AAACAGTTTATTGTTGGCACCAATGCCGACAGCTTCCACTGCACAGATTCTCGGCAATAA 1628 Query 113060 TGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTT 113119 ||||| ||| ||||| ||||| || ||||| |||||||||| |||| || || Sbjct 1629 TGAATCTTTTGAGCCTTACACAAGCAACATTTACTCAAGACGTGTTCTTTCAGGGGAATT 1688 Query 113120 TGTACTTTGT-AATAAATATCTGCAAGAAGAACTTCTCGGA-ATCGGTAAATGGAACAAT 113177 | | |||| ||| | |||||| |||| |||| | || | ||| |||||| | Sbjct 1689 T-CAGATTGTAAATCAGCATCTGC-TGAAGGACTTGACAGAGAGGGGTTTATGGAATGAC 1746 Query 113178 GAAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCAACATCT---AAAATTGCCT 113234 | | |||||| | | ||| | | || || | || ||| | || | ||| Sbjct 1747 ACATTAAAAAACAAACTGGTGGCTGCTAATGGCTCCATACAGCATATTGATGAAATCCCT 1806 Query 113235 GATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCA-ACGTGTCGTAATTGA 113293 ||| | ||| | | ||||| ||||||||||| || | | || | || || Sbjct 1807 GATGATCTCAAACCACTGTACAAGACAGTTTGGGAAATTTCCCAGAGGACTC-TCATAGA 1865 Query 113294 TATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTATGCC 113353 |||||||| || | || || || || ||| ||||| | || | || | | Sbjct 1866 CATGGCTGCTGACAGAGGAGCATTCATTGACCAAAGCCAGTCTTTCAATGTGTTCTTTGC 1925 Query 113354 GGACACCTCACCA-GATAAGGTGACA--TCTGCTCTATTTTACGGCTGGAAAAAAGGTTT 113410 || |||| || | | ||| ||||| ||| | || |||||||||||||| ||| | Sbjct 1926 TGA-ACCTAACTATGGCAAGCTGACAAGCATGCAC--TTCTACGGCTGGAAAAAGGGTCT 1982 Query 113411 AAAAACAGGTATGTATTATTTGCGAACACGTCCT 113444 || ||||| |||||||| ||||| || |||||| Sbjct 1983 CAAGACAGGAATGTATTACTTGCGTACTCGTCCT 2016 >seq187600 Length=3805 Score = 178 bits (196), Expect = 3e-39 Identities = 326/477 (68%), Gaps = 3/477 (1%) Strand=Plus/Plus Query 110682 GGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG- 110740 || || || |||||||| | || | ||| | ||||||| ||||| | ||||| || Sbjct 589 GGTCTGGTACCAATGTTGCGTGTTTACAATGCGACTGCAAGGTATGTCGACCAAGGAGGC 648 Query 110741 --TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAA 110798 ||||||| || | |||||||| || | ||||| |||||| || || ||||| Sbjct 649 AATAAGAGACCAGGTGCCTTTGCTATATACTTGGAACCATGGCATAGTGACATCTTTGAT 708 Query 110799 TTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTAT 110858 ||||| || | | || || |||| |||||||| | || ||||| || || | | Sbjct 709 TTCTTGGACTTGAGGAAGAACACAGGAAAAGAAGAACAGCGTGCTCGTGACTTGTTCTTT 768 Query 110859 GCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTT 110918 || |||||||| | ||| | || |||| ||||| | |||| |||||||| ||| Sbjct 769 GCTTTGTGGATTCCTGATCTCTTTATGAGGCGTGTGGAGAGTGATGGAATGTGGTCACTT 828 Query 110919 ATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT 110978 ||||||||| || | ||||||||| || | ||| ||| ||||| | ||| Sbjct 829 ATGTGTCCTAATGAGTGCCCTGGTCTACAGGACTGCTGGGGAGAAGCTTTTGACAAGCTT 888 Query 110979 TACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGG 111038 || |||| ||||| || |||| ||||| ||| |||||| ||||||| |||| ||| Sbjct 889 TATGAAAGCTATGAGGAACAAGGAAAGTTCCGCCGACAAATCAAAGCTCAAAAACTGTGG 948 Query 111039 TTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCAT 111098 ||| |||| | ||| |||| ||||| || ||||| || || || || |||||| | Sbjct 949 TTCGCAATCATGGAAGCACAGACAGAAACAGGCACTCCATACATGTTATACAAAGATGCT 1008 Query 111099 ATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || | || ||||||| |||| | ||||| || || | || ||| | ||| Sbjct 1009 TGCAACAGAAAGAGTAATCAACAGAATGTTGGAACCATCAAATGCAGCAATCTTTGC 1065 Score = 176 bits (194), Expect = 1e-38 Identities = 329/483 (68%), Gaps = 3/483 (1%) Strand=Plus/Minus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| || || || |||||||| | || | ||| | ||||||| ||||| | ||| Sbjct 3070 TCAAACGGTCTGGTACCAATGTTGCGTGTTTACAATGCAACTGCAAGGTATGTCGACCAA 3011 Query 110736 GGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || ||||||| || | |||||||| || | ||||| |||||| || || Sbjct 3010 GGAGGCAATAAGAGACCAGGTGCCTTTGCTATATACTTGGAACCATGGCATAGTGACATC 2951 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| || || || | | || || |||| |||||||| | || ||||| || Sbjct 2950 TTTGATTTTTTGGACTTGAGGAAGAACACAGGAAAAGAAGAACAGCGTGCTCGTGACTTG 2891 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || | ||| |||||||| | ||| | || |||| ||||| | |||| |||||| Sbjct 2890 TTCTTTGCTTTGTGGATTCCTGATCTCTTTATGAGGCGTGTGGAGAGTGATGGAATGTGG 2831 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || |||||||||||| || | ||||||||| || | ||| ||| ||||| Sbjct 2830 TCACTTATGTGTCCTAATGAGTGCCCTGGTCTACAGGACTGCTGGGGAGAAGCTTTTGAC 2771 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAA 111032 | ||||| |||| ||||| || |||| ||||| ||| |||||| ||||||| || Sbjct 2770 AAGCTTTATGAAAGCTATGAGGAACAAGGAAAGTTCCGCCGACAAATCAAAGCTCAAAAA 2711 Query 111033 CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAA 111092 || |||||| |||| | ||| |||| ||||| || ||||| || || || || ||| Sbjct 2710 CTGTGGTTCGCAATCATGGAAGCACAGACAGAAACAGGCACTCCATACATGTTATACAAA 2651 Query 111093 GATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTG 111152 ||| | || | || ||||||| |||| | ||||| || || | || ||| | Sbjct 2650 GATGCTTGCAACAGAAAGAGTAATCAACAGAATGTTGGAACCATCAAATGCAGCAATCTT 2591 Query 111153 TGC 111155 ||| Sbjct 2590 TGC 2588 Score = 111 bits (122), Expect = 4e-19 Identities = 120/155 (77%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 113000 AAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAA 113059 |||| | || |||||||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 1569 AAACAGTTTATTGTTGGCACCAATGCCGACAGCTTCCACTGCACAGATTCTCGGCAATAA 1628 Query 113060 TGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTT 113119 ||||| ||| ||||| ||||| || ||||| |||||||||| |||| || || Sbjct 1629 TGAATCTTTTGAGCCTTACACAAGCAACATTTACTCAAGACGTGTTCTTTCAGGGGAATT 1688 Query 113120 TGTACTTTGT-AATAAATATCTGCAAGAAGAACTT 113153 | | |||| ||| | |||||| |||| |||| Sbjct 1689 T-CAGATTGTAAATCAGCATCTGC-TGAAGGACTT 1721 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 113008 TACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTT 113067 || |||||||||||||||| |||||||| ||||||||||||||||| |||||||||| || Sbjct 2076 TATTGTTGGCACCAATGCCGACAGCTTCCACTGCACAGATTCTCGGCAATAATGAATCTT 2017 Query 113068 TCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTT 113120 | ||||| ||||| || ||||| |||||||||| |||| || ||| Sbjct 2016 TTGAGCCTTACACAAGCAACATTTACTCAAGACGTGTTCTTTCAGGGGAATTT 1964 >seq187601 Length=2838 Score = 176 bits (194), Expect = 1e-38 Identities = 329/483 (68%), Gaps = 3/483 (1%) Strand=Plus/Minus Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| || || || |||||||| | || | ||| | ||||||| ||||| | ||| Sbjct 2103 TCAAACGGTCTGGTACCAATGTTGCGTGTTTACAATGCAACTGCAAGGTATGTCGACCAA 2044 Query 110736 GGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || ||||||| || | |||||||| || | ||||| |||||| || || Sbjct 2043 GGAGGCAATAAGAGACCAGGTGCCTTTGCTATATACTTGGAACCATGGCATAGTGACATC 1984 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| || || || | | || || |||| |||||||| | || ||||| || Sbjct 1983 TTTGATTTTTTGGACTTGAGGAAGAACACAGGAAAAGAAGAACAGCGTGCTCGTGACTTG 1924 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || | ||| |||||||| | ||| | || |||| ||||| | |||| |||||| Sbjct 1923 TTCTTTGCTTTGTGGATTCCTGATCTCTTTATGAGGCGTGTGGAGAGTGATGGAATGTGG 1864 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 || |||||||||||| || | ||||||||| || | ||| ||| ||||| Sbjct 1863 TCACTTATGTGTCCTAATGAGTGCCCTGGTCTACAGGACTGCTGGGGAGAAGCTTTTGAC 1804 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAA 111032 | ||||| |||| ||||| || |||| ||||| ||| |||||| ||||||| || Sbjct 1803 AAGCTTTATGAAAGCTATGAGGAACAAGGAAAGTTCCGCCGACAAATCAAAGCTCAAAAA 1744 Query 111033 CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAA 111092 || |||||| |||| | ||| |||| ||||| || ||||| || || || || ||| Sbjct 1743 CTGTGGTTCGCAATCATGGAAGCACAGACAGAAACAGGCACTCCATACATGTTATACAAA 1684 Query 111093 GATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTG 111152 ||| | || | || ||||||| |||| | ||||| || || | || ||| | Sbjct 1683 GATGCTTGCAACAGAAAGAGTAATCAACAGAATGTTGGAACCATCAAATGCAGCAATCTT 1624 Query 111153 TGC 111155 ||| Sbjct 1623 TGC 1621 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 113008 TACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTT 113067 || |||||||||||||||| |||||||| ||||||||||||||||| |||||||||| || Sbjct 1109 TATTGTTGGCACCAATGCCGACAGCTTCCACTGCACAGATTCTCGGCAATAATGAATCTT 1050 Query 113068 TCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTT 113120 | ||||| ||||| || ||||| |||||||||| |||| || ||| Sbjct 1049 TTGAGCCTTACACAAGCAACATTTACTCAAGACGTGTTCTTTCAGGGGAATTT 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1182965246363908