Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq174639 320 5e-83 seq75038 304 4e-78 seq12672 262 1e-65 seq174641 181 3e-41 seq75039 154 4e-33 seq25321 134 4e-27 seq174640 129 2e-25 seq251946 95.1 4e-15 >seq174639 Length=919 Score = 320 bits (354), Expect = 5e-83 Identities = 564/814 (69%), Gaps = 7/814 (1%) Strand=Plus/Plus Query 19528 CAACAAC-CGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTC--CTTGC 19584 |||||| ||||| || ||||||| ||||| | || ||| |||| | | | ||| Sbjct 100 CAACAAATCGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCCCTCTTTTAACTTT- 157 Query 19585 AGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 ||| || || ||||| || | || || ||| || || |||| || |||||||| | Sbjct 158 AGCAACTAT-TGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAA 216 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 | | ||||| ||| | || ||||||||||| || ||||| ||| | ||||| || Sbjct 217 TAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAA 276 Query 19704 TTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTG 19763 | || || ||||| || || | || ||||| ||| ||||||| | | | | ||| Sbjct 277 TACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTG 336 Query 19764 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCA 19823 |||| || | || || || || | | ||| |||| || | || || | |||| Sbjct 337 ATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTG 396 Query 19824 TCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGA 19883 | | || ||||| |||| |||||| | || | || |||| ||||| || |||| Sbjct 397 TTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGA 456 Query 19884 TTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGT 19943 | | ||| || | ||| || || |||| ||| || | ||| || ||| | || || || Sbjct 457 TATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAA 516 Query 19944 TTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACA 20003 ||||||| | |||||| ||||||| |||||||| || || || || || || | | Sbjct 517 TTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTA 576 Query 20004 TGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGG 20063 || | || |||||||| |||||||||||| | ||||| || ||||| || || || || | Sbjct 577 TGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAG 636 Query 20064 CTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGC 20123 |||||||||| || || ||| |||| ||||| ||||| ||||| | ||||| || || | Sbjct 637 CTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCAC 696 Query 20124 TTGTGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAG 20183 || | || ||| | | | | || | || ||| || |||||||| ||||||| Sbjct 697 TTCTTGCAGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAG 756 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 | || || |||| ||| ||| || |||||||| ||||| | | || || ||||| | Sbjct 757 ATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATG 816 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 |||| ||||| || ||| ||| ||||||||||| || || ||||| || | |||| Sbjct 817 CTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGA 876 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGC 20337 |||||||| | || | || || ||||||||| Sbjct 877 TTTGGTTCACAGCACTTGGAGTAAGTACAATGGC 910 >seq75038 Length=481 Score = 304 bits (336), Expect = 4e-78 Identities = 357/481 (74%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 19865 CTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCG 19924 ||||||||| | ||||||||| ||| || || || | ||| |||||||| || ||||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 19925 GTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATC 19984 || ||| | | ||||| ||||||| || || || |||| |||||||| || || Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 19985 TCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCG 20044 || || || ||||| | ||| | || |||||||| || ||||| ||| | ||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 20045 TTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGT 20104 || || ||| | ||||| |||||||| || ||||| ||| |||| ||| ||||| ||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 20105 TCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATG 20162 || | ||||| || || | | ||||| || |||||| | ||| ||| || || Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAA--TCAACAAATGCTG 182 Query 20163 GTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTG 20222 |||| | || || ||||||||||| || |||||||| ||||| || |||||||| |||| Sbjct 181 GTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTG 122 Query 20223 GACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTG 20282 | ||||| || |||||||| ||||||||||| || || ||| |||| |||||| | | Sbjct 121 GTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAG 62 Query 20283 CTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTA 20342 || ||||| || || || ||||||||| || | || || |||| |||||||| |||| Sbjct 61 CTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTA 2 Query 20343 A 20343 | Sbjct 1 A 1 >seq12672 Length=424 Score = 262 bits (290), Expect = 1e-65 Identities = 315/426 (74%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 19920 CTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGG 19979 ||||||| ||| | | ||||| ||||||| || || || |||| |||||||| | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 19980 GTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGC 20039 | || || || || ||||| | ||| | || |||||||| || ||||| ||| | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 20040 ACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGC 20099 | || || || ||| | ||||| |||||||| || ||||| ||| |||| ||| |||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 20100 ACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG--AA 20157 | ||||| | ||||| || || | | ||||| || |||||| | ||| ||| || Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAA--TCAACAAA 238 Query 20158 CTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTA 20217 |||||| | || || ||||||||||| || |||||||| ||||| || |||||||| Sbjct 239 TGCTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTA 298 Query 20218 CTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTT 20277 ||||| ||||| || |||||||| ||||||||||| || || ||| |||| ||||| Sbjct 299 TTTTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTT 358 Query 20278 CCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGC 20337 | | ||| ||||| || || || ||||||||| || | || || |||| |||||||| Sbjct 359 CTTAGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGC 418 Query 20338 GTTTAA 20343 ||||| Sbjct 419 ATTTAA 424 >seq174641 Length=312 Score = 181 bits (200), Expect = 3e-41 Identities = 214/290 (74%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 19836 TGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCT 19895 |||| |||| |||||| | || | || |||| ||||| || ||||| | ||| || | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 19896 ACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTA 19955 ||| || || |||| ||| || | ||| || ||| | || || || ||||||| | || Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 |||| ||||||| |||||||| || || || || || || | ||| | || |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCG 20075 |||| |||||||||||| | ||||| || ||||| || || || || ||||||||||| | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 20076 GTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT 20125 | || ||| |||| ||||| ||||| ||||| | ||||| || || ||| Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTT 23 >seq75039 Length=421 Score = 154 bits (170), Expect = 4e-33 Identities = 251/356 (71%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||| | ||| |||| ||||||||| |||||||| | | | |||| ||| Sbjct 354 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 295 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| || |||| || || ||||| || |||||||| || || || Sbjct 294 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGA 236 Query 19651 ACCCGTATCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA 19709 ||| || || ||| | || || ||||||||||| || || | || || | |||| | Sbjct 235 ACCTGTTTCTGGTT-CATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTA 177 Query 19710 GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAAT 19769 || || || || |||| || || ||||||||||||||| ||| | ||||||| Sbjct 176 CTTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAAT 117 Query 19770 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATG 19829 |||| || || || ||||| | ||| | | || | |||||| || | || || | | Sbjct 116 GGCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTT 57 Query 19830 CTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATT 19885 || |||||||| || ||||||||| | ||| ||||||||| | ||||||||| Sbjct 56 GCTATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGATT 1 >seq25321 Length=478 Score = 134 bits (148), Expect = 4e-27 Identities = 228/325 (70%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||| | ||| |||| ||||||||| |||||||| | | | |||| ||| Sbjct 156 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 215 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| || |||| || || |||||||| |||||||| || || || Sbjct 216 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTGA 274 Query 19651 ACCCGTATCCGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA 19709 ||| || || ||| | || || ||||||||||| || || | || || | |||| | Sbjct 275 ACCTGTTTCTGGTT-CATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTA 333 Query 19710 GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAAT 19769 || || || || |||| || || ||||||||||||||| ||| | ||||||| Sbjct 334 CTTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAAT 393 Query 19770 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATG 19829 |||| || || || ||||| | ||| | | || | |||||| || | || || | | Sbjct 394 GGCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTT 453 Query 19830 CTTACATGGGACGAGAGTGGGAACT 19854 || |||||||| || |||||||| Sbjct 454 GCTATATGGGACGTGAATGGGAACT 478 >seq174640 Length=289 Score = 129 bits (142), Expect = 2e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 20161 TGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTT 20220 ||| || |||||||| |||||||| || || |||| ||| ||| || |||||||| || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 20221 TGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCT 20280 ||| | | || || ||||| ||||| ||||| || ||| ||| ||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 20281 TGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTT 20340 || || ||||| || | || ||||||||| | || | || || ||||||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 20341 TAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGA 20379 || | || ||||| ||||| ||||| ||| | || || Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGA 38 >seq251946 Length=233 Score = 95.1 bits (104), Expect = 4e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19730 CACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCG 19789 ||||| || ||||||||||||||| || | ||||||||| | || || || || || Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 19790 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGG 19849 | || | | || | || || | | || ||| | ||| || || || |||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 19850 GAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTT 19909 ||||| || ||||| |||| ||| | || ||||| | |||||| | | | || || || Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 19910 GCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAG 19956 ||||| || | || || ||||| || || || ||||||| || || Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGGAAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148381612988424