Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq174639 320 5e-83 seq75038 300 5e-77 seq12672 264 3e-66 seq174641 154 4e-33 seq75039 141 3e-29 seq174640 136 1e-27 seq25321 127 6e-25 seq251946 102 2e-17 >seq174639 Length=919 Score = 320 bits (354), Expect = 5e-83 Identities = 564/814 (69%), Gaps = 7/814 (1%) Strand=Plus/Plus Query 28656 CAACAAC-CGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTC--CTTGC 28712 |||||| ||||| || ||||||| ||||| | || ||| |||| | | | ||| Sbjct 100 CAACAAATCGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCCCTCTTTTAACTTT- 157 Query 28713 AGCCACCATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 ||| || || ||||| || | || || ||| ||||| |||| || |||||||| | Sbjct 158 AGCAACTAT-TGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAA 216 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 | | ||||| || ||||| ||||| ||||| || ||||| ||| | ||||| || Sbjct 217 TAAGAGAACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAA 276 Query 28832 TACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTG 28891 |||| || ||||| || || | || ||||| ||| ||||||| | ||| | ||| Sbjct 277 TACCAAGTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTG 336 Query 28892 ATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCG 28951 |||| || | || || || || | | ||| |||| || | || || | |||| | Sbjct 337 ATGAGTGCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTG 396 Query 28952 TCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGA 29011 | | || ||||| | || |||||| | || | || |||| ||||| || |||| Sbjct 397 TTGCTTGTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGA 456 Query 29012 TTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCAT 29071 | | ||| || | |||||| || || | ||| || | ||| || || | || || ||| Sbjct 457 TATTTGTAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAA 516 Query 29072 TCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACA 29131 | ||||||| | ||| ||| | |||||||| || || || || || || | | Sbjct 517 TTGGTCAAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTA 576 Query 29132 TGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTG 29191 |||| ||||||||||| |||||||||||| | ||||| || ||||| || || || || | Sbjct 577 TGCTTGTGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAG 636 Query 29192 CTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGC 29251 |||| || || || || || |||||||||||||||| ||||| | || || || || | Sbjct 637 CTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCAC 696 Query 29252 TTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAG 29311 || | || || | | ||| || | || ||| || |||||||| ||||||| Sbjct 697 TTCTTGCAGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAG 756 Query 29312 AAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATG 29371 | || ||||||| ||| ||| || || ||||| ||||| | | || || ||||||| Sbjct 757 ATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATG 816 Query 29372 CTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 29431 |||| |||||||| ||| ||| ||||||||||| || || ||||| || | |||| Sbjct 817 CTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGA 876 Query 29432 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGC 29465 |||||||| | || | || || ||||||||| Sbjct 877 TTTGGTTCACAGCACTTGGAGTAAGTACAATGGC 910 >seq75038 Length=481 Score = 300 bits (332), Expect = 5e-77 Identities = 354/479 (74%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 28993 CTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCG 29052 ||||||||| | || |||||| ||| || || |||| ||| || ||||| || ||||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 29053 GTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATT 29112 || || | | |||||| | |||||||| || ||| || | |||||||| || ||| Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 29113 TCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCG 29172 ||||| || ||||| | ||| | || |||||||| || ||||| ||| | ||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 29173 TTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGT 29232 || || ||| | || || ||||| ||||| ||||| || ||||| ||| ||||| ||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 29233 TCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGT 29292 || | || || || || | | ||||| || |||||| | || || |||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 29293 TACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGA 29352 || | || |||||||||||||| || |||||||| ||||| || || ||||| ||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 29353 CGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCT 29412 ||||| || ||||||||||||||||||||||| || ||| |||| |||||| | ||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 29413 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAA 29471 ||||| || || || ||||||||| || | || || |||| |||||||| ||||| Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 264 bits (292), Expect = 3e-66 Identities = 313/424 (74%), Gaps = 0/424 (0%) Strand=Plus/Plus Query 29048 CTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGG 29107 ||||||| || | | |||||| | |||||||| || ||| || | |||||||| | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 29108 GTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGC 29167 | |||||||| || ||||| | ||| | || |||||||| || ||||| ||| | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 29168 ACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGC 29227 | || || || ||| | || || ||||| ||||| ||||| || ||||| ||| |||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 29228 ACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACT 29287 | ||||| | || || || || | | ||||| || |||||| | || || Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATG 240 Query 29288 ATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACT 29347 |||||| | || |||||||||||||| || |||||||| ||||| || || ||||| | Sbjct 241 CTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATT 300 Query 29348 TTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCC 29407 |||| ||||| || ||||||||||||||||||||||| || ||| |||| |||||| Sbjct 301 TTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCT 360 Query 29408 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 29467 | ||| ||||| || || || ||||||||| || | || || |||| |||||||| | Sbjct 361 TAGCTATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCAT 420 Query 29468 TTAA 29471 |||| Sbjct 421 TTAA 424 >seq174641 Length=312 Score = 154 bits (170), Expect = 4e-33 Identities = 208/290 (72%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 28964 TGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCAT 29023 |||| | || |||||| | || | || |||| ||||| || ||||| | ||| || | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 29024 ACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTT 29083 |||||| || || | ||| || | ||| || || | || || ||| | ||||||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 29084 CTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCC 29143 ||| ||| | |||||||| || || || || || || | ||||| ||||||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 29144 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCG 29203 |||| |||||||||||| | ||||| || ||||| || || || || ||||| || || | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 29204 GTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTT 29253 | || || |||||||||||||||| ||||| | || || || || ||| Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTT 23 >seq75039 Length=421 Score = 141 bits (156), Expect = 3e-29 Identities = 246/355 (69%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||| | ||| |||| ||||||||| |||||||| | | | |||| ||| Sbjct 354 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 295 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| || |||| ||||| ||||| || |||||||| || || || Sbjct 294 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTAGATATTGATGGAATTCGTGA 236 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| |||| | | ||||||||||| || || | || || | | || | Sbjct 235 ACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTAC 176 Query 28839 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 28898 || || || || |||| || || ||||||||||||||| ||| | |||||||| Sbjct 175 TTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATG 116 Query 28899 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 28958 ||| || || || ||||| | ||| | | || | |||||| || | || | | | Sbjct 115 GCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTG 56 Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATT 29013 || |||||||| || ||||||||| | ||| ||||||||| | || |||||| Sbjct 55 CTATATGGGACGTGAATGGGAACTTTCGTTTCGTCTAGGAATGCGCCCTTGGATT 1 >seq174640 Length=289 Score = 136 bits (150), Expect = 1e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29289 TGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTT 29348 ||| || |||||||| |||||||| || ||||||| ||| ||| || || ||||| || Sbjct 256 TGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTT 197 Query 29349 TGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCT 29408 ||| | | || || ||||||||||| |||||||| ||| ||| ||||||||||| Sbjct 196 TGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCT 137 Query 29409 TGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTT 29468 || || ||||| || | || ||||||||| | || | || || ||||||||| || Sbjct 136 AGCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTT 77 Query 29469 TAATCTGAACGGTTTTAACTTTAACCAGTC 29498 || | || ||||| ||||| ||||| || Sbjct 76 CAACTTAAATGGTTTAAACTTCAACCAATC 47 >seq25321 Length=478 Score = 127 bits (140), Expect = 6e-25 Identities = 224/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||| | ||| |||| ||||||||| |||||||| | | | |||| ||| Sbjct 156 AACCGATTATATATTGGTTGGTTTGGAGTTTGCATGATTCCAACTTTATTAACAGCTACC 215 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| || |||| ||||| |||||||| |||||||| || || || Sbjct 216 -TCTGTATTTATTATTGCTTTTGTTGCTGCACCTCCAGTTGATATTGATGGAATTCGTGA 274 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| |||| | | ||||||||||| || || | || || | | || | Sbjct 275 ACCTGTTTCTGGTTCATTATTATATGGAAACAATATTATTACAGGGGCTATTATTCCTAC 334 Query 28839 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 28898 || || || || |||| || || ||||||||||||||| ||| | |||||||| Sbjct 335 TTCAAACGCAATTGGTTTACATTTTTATCCAATTTGGGAAGCTGCTTCTTTAGATGAATG 394 Query 28899 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 28958 ||| || || || ||||| | ||| | | || | |||||| || | || | | | Sbjct 395 GCTATATAATGGTGGACCTTATCAATTAATTGTTTGCCACTTTTTCTTAGGAATTTGTTG 454 Query 28959 TTACATGGGACGCGAGTGGGAACT 28982 || |||||||| || |||||||| Sbjct 455 CTATATGGGACGTGAATGGGAACT 478 >seq251946 Length=233 Score = 102 bits (112), Expect = 2e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 ||||| || ||||||||||||||| || | ||||||||| | || || || || || Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 28977 | || | | || | || || | | || |||| | ||| || || || |||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 28978 GAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTC 29037 ||||| || ||||| |||| ||| | || ||||| | ||| || | | | || || || Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 29038 GCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 ||||| ||| | || ||||| || || || ||| | |||||||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146224912771688