Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq174639 361 2e-95 seq75038 286 1e-72 seq12672 241 4e-59 seq75039 194 5e-45 seq174641 190 6e-44 seq25321 159 1e-34 seq251946 120 9e-23 seq174642 93.3 1e-14 >seq174639 Length=919 Score = 361 bits (400), Expect = 2e-95 Identities = 567/808 (70%), Gaps = 4/808 (0%) Strand=Plus/Plus Query 18751 AACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTC--CTTGCAGCTA 18808 || ||||| || || || || ||||| | || ||| |||| | | | ||| ||| | Sbjct 105 AATCGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCCCTCTTTTAACTTT-AGCAA 162 Query 18809 CTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCG 18868 ||||| || || | || || ||| ||||||| | ||||| |||||||| || | | Sbjct 163 CTATTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAG 222 Query 18869 AGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA 18928 | || || || ||| ||||||||||| || ||||| ||| | ||||| || | || | Sbjct 223 AACCAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAA 282 Query 18929 GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAAT 18988 | ||||| || || | || ||||| ||| ||||||| | ||| | ||||||| | Sbjct 283 GTTCTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGT 342 Query 18989 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATG 19048 | | || || || || | | ||| |||| || | || || | |||| || | Sbjct 343 GCTTATATAATGGTGGTACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTTGCTT 402 Query 19049 CTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTG 19108 || ||||| | || |||||| | || | || |||| ||| | || ||||| | || Sbjct 403 GTTGGATGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTG 462 Query 19109 TTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTC 19168 | || | |||||| ||||||| ||||| | ||| || || |||| |||||| |||||| Sbjct 463 TAGCTTTCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTC 522 Query 19169 AAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTG 19228 ||| | |||| ||| | |||||||| || || ||||| || || || | ||||||| Sbjct 523 AAGCTAGCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTG 582 Query 19229 TATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTG 19288 | ||||| || ||||||||||| | ||||| || ||||| || || || || ||||||| Sbjct 583 TGTTCCAAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTG 642 Query 19289 TGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC 19348 | || || || ||| |||||||||| ||||| ||||| | ||||| || || ||| | Sbjct 643 TATTTGGAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTG 702 Query 19349 GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGA 19408 |||||| | | ||| | | || ||| || |||||||| |||||||| || | Sbjct 703 CAGAAACTGCAGGAGATATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAA 762 Query 19409 CTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCT 19468 |||||| ||| || || ||||| ||||||||| | || || || || || || |||| Sbjct 763 CTTATAGCATATCAGCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTCCT 822 Query 19469 TCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGT 19528 |||| || ||| ||| || ||||| | || |||||||| || |||| ||||||| Sbjct 823 TCAATAACTCTCGTAGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGT 882 Query 19529 TTGCCGCCCTTGGGGTAAGCACCATGGC 19556 | | || ||||| ||||| || ||||| Sbjct 883 TCACAGCACTTGGAGTAAGTACAATGGC 910 >seq75038 Length=481 Score = 286 bits (316), Expect = 1e-72 Identities = 331/446 (74%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 19084 CTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCG 19143 ||||| ||||||||||||||| ||| || || |||| ||| ||||| || || ||||| Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 19144 GTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 || || | | || ||| |||||||||| || ||| || | |||||||| || ||| Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 || || ||||| | ||| |||| ||||| || || ||||| || | ||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || || ||| | ||||| ||||||||||| || || ||| ||||| ||| ||||| ||| Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 19324 TCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGC 19383 || | ||||| || || | | |||||||| |||||| | | ||| || ||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 19384 TACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGT 19443 || | || || ||||||||||| || ||||||||||| || || ||||| ||||||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 19444 CGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCT 19503 || | |||||||| || || || ||||| || || ||| |||||||||| || ||| Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 19504 GCTTGGCCTGTGGTTGGCATTTGGTT 19529 ||||||||| ||||| |||||||| Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTT 34 >seq12672 Length=424 Score = 241 bits (266), Expect = 4e-59 Identities = 288/391 (74%), Gaps = 0/391 (0%) Strand=Plus/Plus Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 ||||||| || | | || ||| |||||||||| || ||| || | |||||||| | Sbjct 1 CTGCGGTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAG 60 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | ||| || || ||||| | ||| |||| ||||| || || ||||| || | |||| Sbjct 61 GAATTTCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGC 120 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 | || || || ||| | ||||| ||||||||||| || || ||| ||||| ||| |||| Sbjct 121 ATCCTTTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGC 180 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 | ||||| | ||||| || || | | |||||||| |||||| | | ||| || Sbjct 181 ATGGTTCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATG 240 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 ||| || | || || ||||||||||| || ||||||||||| || || ||||| |||| Sbjct 241 CTGGTTATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATT 300 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 ||||||| | |||||||| || || || ||||| || || ||| |||||||||| | Sbjct 301 TTGGTCGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCT 360 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTT 19529 | ||| ||||||||| ||||| |||||||| Sbjct 361 TAGCTATTTGGCCTGTAGTTGGAATTTGGTT 391 >seq75039 Length=421 Score = 194 bits (214), Expect = 5e-45 Identities = 277/384 (72%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||||| ||| | || |||||||||||||| | ||||| || ||||||||| Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 |||||||| | | | ||||||| | ||| || |||||||| || |||||||||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACC-TCTGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTC-TTCTT-TATGGAAAC 18900 ||| ||||| |||||||| || || || |||||| | || || || || ||||||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGT--TCATTATTATATGGAAAC 205 Query 18901 AACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || | || || | |||| | || || || || |||| || || ||| Sbjct 204 AATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCA 145 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 |||||||||||| ||| | ||||||||||| || || || ||||| | ||| | | Sbjct 144 ATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATT 85 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | |||||| || | || | | | || |||||||| || ||||||||| | | Sbjct 84 GTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTT 25 Query 19081 CGACTAGGGATGCGCCCTTGGATT 19104 || ||||| ||||||||||||||| Sbjct 24 CGTCTAGGAATGCGCCCTTGGATT 1 >seq174641 Length=312 Score = 190 bits (210), Expect = 6e-44 Identities = 216/290 (74%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 19055 TGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCT 19114 |||| | || |||||| | || | || |||| ||| | || ||||| | ||| || | Sbjct 312 TGGGTAGAGAATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTT 253 Query 19115 ACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTT 19174 |||||| ||||||| ||||| | ||| || || |||| |||||| ||||||||| | Sbjct 252 TCTCAGCACCTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTA 193 Query 19175 CCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCC 19234 |||| ||| | |||||||| || || ||||| || || || | |||||||| |||| Sbjct 192 GCTTTTCCGATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCC 133 Query 19235 AGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCG 19294 | || ||||||||||| | ||||| || ||||| || || || || |||||||| || | Sbjct 132 AAGCAGAACATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTG 73 Query 19295 GCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT 19344 | || ||| |||||||||| ||||| ||||| | ||||| || || ||| Sbjct 72 GAGGTTCATTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTT 23 >seq25321 Length=478 Score = 159 bits (176), Expect = 1e-34 Identities = 250/353 (71%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||||| ||| | || |||||||||||||| | ||||| || ||||||||| Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 |||||||| | | | ||||||| | ||| || |||||||| || |||||||||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTAC-CTCTGTATTTATTATTGCTTTTGTTGCTGCACC 247 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGG--CAGTCTTCTTTATGGAAAC 18900 ||| || || |||||||| || || || |||||| | || || | | | ||||||||| Sbjct 248 TCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTAT--TATATGGAAAC 305 Query 18901 AACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || | || || | |||| | || || || || |||| || || ||| Sbjct 306 AATATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCA 365 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 |||||||||||| ||| | ||||||||||| || || || ||||| | ||| | | Sbjct 366 ATTTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATT 425 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACT 19073 || | |||||| || | || | | | || |||||||| || |||||||| Sbjct 426 GTTTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq251946 Length=233 Score = 120 bits (132), Expect = 9e-23 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008 ||||| || ||||||||||||||| || | ||||||||| | || || || || || Sbjct 228 CACTTTTATCCAATTTGGGAAGCTGCATCTTTAGATGAATGGTTATATAATGGTGGCCCT 169 Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068 | || | | || | || || | | || |||| | ||| || || || |||||| Sbjct 168 TATGAATTGATTGTGCTACATTTTTTATTAGGGGTCTGTTGTTATATTGGTCGTGAGTGG 109 Query 19069 GAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTT 19128 ||||| || ||||| |||| ||||| || ||||| | |||||| | | | || ||||| Sbjct 108 GAACTAAGTTATCGTTTAGGTATGCGTCCATGGATCTCTGTTGCTTTCACGGCACCTGTA 49 Query 19129 GCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGG 19172 || ||||| | || || || ||||| |||||| |||||||||| Sbjct 48 GCAGCAGCAGCAGCAGTTTTTCTTGTATATCCAATTGGTCAAGG 5 >seq174642 Length=303 Score = 93.3 bits (102), Expect = 1e-14 Identities = 189/276 (68%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 18754 CGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTC--CTTGCAGCTACTA 18811 ||||| || || || || ||||| | || ||| |||| | | | ||| ||| |||| Sbjct 301 CGTCTCTACATTGGGTGCTTTGGTATCCTAATG-TTCCCTCTTTTAACTTT-AGCAACTA 244 Query 18812 TTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGC 18871 || || || | || || ||| ||||||| | ||||| |||||||| || | || | Sbjct 243 TTGCTTATATCACAGCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAAC 184 Query 18872 CTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCA 18931 | || || ||| ||||||||||| || ||||| ||| | ||||| || | || || Sbjct 183 CAGTAGCTGGCTCACTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTT 124 Query 18932 GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGC 18991 ||||| || || | || ||||| ||| ||||||| | ||| | ||||||| || Sbjct 123 CTAATGCTATTGGGGTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCT 64 Query 18992 TCTACAACGGGGGACCGTTCCAACTTGTGGT-CTTC 19026 | || || || || | | ||| |||| || |||| Sbjct 63 TATATAATGGTGGTACATATCAATTTGTAGTACTTC 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140724689142024