Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq24780 80.6 8e-12 seq8772 80.6 8e-12 >seq24780 Length=726 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||||| | ||||||||||||| |||||||||||||||| |||| Sbjct 290 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAAACCGG 234 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||||| | ||||||||||||| |||||||||||||||| |||| Sbjct 643 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAAACCGG 587 >seq8772 Length=371 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||||||||||| | ||||||||||||| |||||||||||||||| |||| Sbjct 257 TAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAAAACCGG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15805736331060