Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq77635 122 8e-23 seq143707 105 6e-18 seq99092 102 7e-17 seq146719 96.9 3e-15 seq131321 96.9 3e-15 seq127998 96.9 3e-15 seq99093 96.9 3e-15 seq146718 91.5 1e-13 seq149514 89.7 5e-13 seq119667 89.7 5e-13 seq65045 89.7 5e-13 seq77720 86.0 6e-12 >seq77635 Length=207 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25177 GCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGA 25236 |||| | ||||| ||||||||||| |||||| | ||||| | || || ||| | || || Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 25237 TACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCA 25296 ||| || | | |||||| ||||||| |||||||| ||||| || || || || || Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 25297 AAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATAT 25356 | || | |||| | || |||||| | ||||||| | | | | |||||||| || Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCGTACATTATCTGATTACAACAT 28 Query 25357 TCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| | |||||||| Sbjct 27 CCAAAAAGAATCCACATTACATTTAGT 1 >seq143707 Length=308 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || || || | ||||| || | ||||| | ||||| ||| | Sbjct 259 CATCATGCAGATCTTCGTGAAGACTCTGACCGGTAAGACTATCACTCTTGAAGTTGAACC 200 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| | ||||||| | || || || || || ||||| || || |||||||| Sbjct 199 AAGCGACAGTATCGAGAATGTGAAGACGAAGATCCAAGACAAAGAAGGCATCCCGCCCGA 140 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || | ||||||| || ||||||||||| ||||||| | | | | || || || Sbjct 139 TCAACAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGACTA 80 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| ||||| ||||| ||||| |||| | || | | |||||||| |||| Sbjct 79 CAACATTCAGAAAGAGTCCACTCTTCACCTTGTTCTTCGCTTGAGAGGTGGAA 27 >seq99092 Length=231 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 25196 TTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAA 25255 ||||| || ||| | || || | || || ||||| || ||||| || | | |||||| Sbjct 1 TTAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAA 60 Query 25256 CAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGC 25315 ||||||| |||||||| || ||||| || || || |||||| | || | | || Sbjct 61 GCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGT 120 Query 25316 AAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATT 25375 |||||| | ||||||| | | | ||||| ||||||||||||||||| || | Sbjct 121 AAACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCAACATTG 180 Query 25376 CATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||| | || ||||| || Sbjct 181 CATTTAGTATTACGTTTAAGAGGTGG 206 >seq146719 Length=228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || ||||| | ||||| | ||||| ||||| | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || || || || || |||||||| || |||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||||||| || || |||||||||||||||| | | | | || ||||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAACTCGAAGATGGTCGCACGCTTTCTGACTACAAC 205 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||| || || ||| |||| Sbjct 206 ATCCAAAAGGAGTCTACCCTTCA 228 >seq131321 Length=300 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||||||||| || ||| | || || | || || ||||| || Sbjct 186 ATGCAAATATTTGTTAAAACATTAACTGGTAAAACAATTACATTAGATGTTGAAGCAAAT 127 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || | | |||||| |||||| |||||||| || ||||| || || || Sbjct 126 GATACAATACAAAATGTAAAAGCAAAAATACAAGATAAAGAAGGAATACCACCAGAACAA 67 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || |||||| | || |||| ||||| | ||||| ||| Sbjct 66 CAAAGATTAATATTTGCAGGTAAACAATTAGAGGATGGTAGAACATTATCTGATTATAAT 7 Query 25355 ATTCAA 25360 |||||| Sbjct 6 ATTCAA 1 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || |||||| | |||| || || |||||| | ||||||| | | | | || ||||| Sbjct 300 CAACAAAGATTGATTTTCGCTGGAAAACAATTAGAAGATGGACGTACTTTGAGTGATTAT 241 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| || | |||||||| |||||||| ||||| || Sbjct 240 AATATTCAAAAAGAATCAACATTACATTTAGTATTAAGATTAAGAGGTGG 191 >seq127998 Length=685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | || || ||| | ||||| | || || ||| ||| Sbjct 661 CATGCAGATCTTTGTGAAAACCCTGACAGGGAAAACTATCACCCTTGAGGTGGAA-CCAT 603 Query 25234 CG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 || || | ||||| | || ||| || ||| ||||| || ||||| || || |||| Sbjct 602 CGGATTCCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATC 543 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | || ||||||||| | ||||| ||||| ||||||| |||| | ||||||| Sbjct 542 AACAGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACA 483 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 | || || ||||||||||| |||| | ||||| || Sbjct 482 ACATACAGAAAGAATCCACTCTTCACCTTGTGTTGAG 446 >seq99093 Length=221 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 25196 TTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAA 25255 ||||| || ||| | || || | || || ||||| || ||||| || | | |||||| Sbjct 1 TTAACAGGTAAAACAATTACATTAGATGTTGAAGCAAATGATACAATTCAAAATGTAAAA 60 Query 25256 CAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGC 25315 ||||||| |||||||| || ||||| || || || |||||| | || | | || Sbjct 61 GCAAAAATTCAAGATAAAGAAGGAATACCACCAGAACAACAAAGATTAATATTTGCAGGT 120 Query 25316 AAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATT 25375 |||||| | ||||||| | | | ||||| ||||||||||||||||| || || Sbjct 121 AAACAATTAGAAGATGGACGTACATTATCTGATTATAATATTCAAAAAGAATCGACTCTT 180 Query 25376 CATTTAGTGTTAAGATTGAGAGGAGGAA-AATG 25407 || || || ||||| | |||| |||| |||| Sbjct 181 CACTTGGTATTAAGGCTTCGAGGTGGAACAATG 213 >seq146718 Length=320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || ||||| | ||||| | ||||| ||||| | | Sbjct 26 ATGCAGATCTTTGTGAAGACGCTGACTGGAAAGACCATCACCCTTGAAGTTGAAGCTAGC 85 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || || || || || |||||||| || |||||||| Sbjct 86 GACACCATCGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGTATCCCTCCCGATCAA 145 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||||||| || || |||||||||||||||| | | | | || ||||| Sbjct 146 CAGCGACTCATTTTCGCTGGGAAACAACTCGAAGATGGTCGCACGCTTTCTGACTACAAC 205 Query 25355 ATTCAAAAAGAATCCACC 25372 || ||||| || || ||| Sbjct 206 ATCCAAAAGGAGTCTACC 223 >seq149514 Length=710 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | || || ||| | ||||| | || || ||| | | Sbjct 52 CATGCAGATCTTCGTGAAAACTCTGACGGGGAAAACCATCACCCTTGAGGTTGAACCTAG 111 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||| ||| | || ||| ||| || || || || || || || || || || Sbjct 112 TGACTCTATTGAGAATGTCAAAACAAAGATCCAAGACAAGGAAGGAATTCCACCTGACCA 171 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | |||| | || ||||| || ||||||| ||| | | || ||||| || Sbjct 172 GCAAAGATTGATTTTTGCTGGTAAACAGCTTGAAGATGGACGAACTCTTAGTGATTATAA 231 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || || || || |||||| ||||| | ||| | | ||||||||||| Sbjct 232 CATCCAGAAGGAGTCCACCCTTCATCTTGTGCTTCGCCTGAGAGGAGGA 280 >seq119667 Length=392 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || ||||||| ||| | || || | || || || || Sbjct 24 ATGCAGATATTCGTGAAGACGCTAACCGGGAAAACCATTACCCTTGAGGTGGAGCCCTCT 83 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || || ||| || || || || || |||||||| || Sbjct 84 GATACTATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGAATCCCGCCCGACCAA 143 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | ||| ||||| || ||||||| | | | | |||||||||||| Sbjct 144 CAACGCCTTATCTTTGCCGGGAAACAGCTAGAAGATGGTCGTACCCTGAGCGATTACAAT 203 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||| || ||||||||| ||||| Sbjct 204 ATTCAGAAGGAATCCACCCTTCAT 227 >seq65045 Length=242 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || |||||||| | ||||| ||||||| || || Sbjct 16 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACTATCACCCTCGAAGTTGAGTCCTCG 75 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || || |||||| || || || || || || || || || Sbjct 76 GATACTATTGAGAATGTCAAGTCTAAAATTCAGGACAAGGAAGGAATCCCTCCGGACCAA 135 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| || || || || |||| | | | | | || |||||| Sbjct 136 CAACGTCTCATTTTCGCCGGTAAGCAGCTTGAGGATGGTCGCACTCTATCGGACTACAAT 195 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||| || ||||| || ||||| Sbjct 196 ATTCAGAAGGAATCTACTCTTCAT 219 >seq77720 Length=294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || |||||||| | || || ||||||| || || Sbjct 253 ATGCAGATTTTCGTAAAGACTTTGACCGGAAAGACTATTACCCTCGAAGTTGAGTCCTCG 194 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || ||| |||||| || || || || || || || || || Sbjct 193 GATACTATTGAGAATGTTAAATCCAAAATTCAGGACAAGGAAGGAATCCCTCCGGACCAA 134 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| || || || || |||| | | | | | || |||||| Sbjct 133 CAACGTCTCATTTTCGCCGGTAAGCAGCTTGAGGATGGTCGCACTCTATCGGACTACAAT 74 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 73 ATTCAGAAGGAATCTAC 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443686633176960