Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq44199 163 3e-35 seq43932 129 7e-25 seq43933 120 4e-22 seq96271 113 5e-20 seq96269 113 5e-20 >seq44199 Length=311 Score = 163 bits (180), Expect = 3e-35 Identities = 222/302 (74%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090 || ||||||||||| || |||| |||||| || | ||| | |||||||| | |||| || Sbjct 311 GCGATGTTGAAGGGCACGCCCAAGCCCATATCACACGAGCGCTGGTACATCAGGCAGGAC 252 Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 || || |||| ||| || || |||||||| | ||||| ||||| |||| ||||||| | Sbjct 251 AGTTCACCGTTGGCAACATAGAACTGGCAGAACATGTGACACGGGGGCAACGCCATGAGG 192 Query 147151 GGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCT-CTT 147209 ||| ||||| || |||||||| || | | | || | | || ||| || | ||| Sbjct 191 TGCAAATCCGCAGGATTCCAGGCTGACAGAAGGATACGAC-GATCAGTGGGATCTTCCTT 133 Query 147210 AATCTCTTCGAT-AACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGC 147268 |||| ||| || | | |||||| ||||||||||| || ||||| || || Sbjct 132 GATCTTCCGGATGCACTCGGC-CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGT-GTGC 75 Query 147269 A-GTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCG 147327 | |||| |||| | ||||||||||| | ||||||||||||||| || || ||||||||| Sbjct 74 ATGTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCG 15 Query 147328 CC 147329 || Sbjct 14 CC 13 >seq43932 Length=221 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 147001 GCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 |||| |||| |||| ||||| || || || ||||||||||| || |||| |||||| Sbjct 1 GCCATCATGCAGGTCAGCAGAGAATAAGATGCGATGTTGAAGGGCACGCCCAAGCCCATA 60 Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCAC 147120 || | ||| | |||||||| | |||| || || || |||| ||| || || |||||||| Sbjct 61 TCACACGAGCGCTGGTACATCAGGCAGGACAGTTCACCGTTGGCAACATAGAACTGGCAG 120 Query 147121 AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGA 147176 | ||||| ||||| |||| ||||||| | ||| ||||| || |||||||| || Sbjct 121 AACATGTGACACGGGGGCAACGCCATGAGGTGCAAATCCGCAGGATTCCAGGCTGA 176 >seq43933 Length=829 Score = 120 bits (132), Expect = 4e-22 Identities = 199/281 (71%), Gaps = 16/281 (6%) Strand=Plus/Plus Query 147231 CAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCACGTACCTGGCCCCAA 147289 |||||| ||||||||||| || ||||| || ||| |||| |||| | ||||||| Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGT-GTGCATGTCCTGGTACTTCGCCCCAA 87 Query 147290 AGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGC 147349 |||| | ||||||||||||||| || || |||||||||| ||| || || || | Sbjct 88 AGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGC----CTTCCT---CGCGATGT 140 Query 147350 CC---GCC-CGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 || ||| |||||| || |||||| | || |||| ||| ||||| || | || ||| Sbjct 141 CCCAAGCCGCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCC 200 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAA 147462 || ||| | | || | || || || ||||||||| |||| || |||| Sbjct 201 TTCTCGGTCAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGC 260 Query 147463 ACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAA 147503 ||||| | ||| ||||| | |||||| ||||| || ||||| Sbjct 261 ACCCCACGCCAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 >seq96271 Length=453 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | ||||| | || | ||| || | || || || || || ||||| || || Sbjct 210 AGCTGGAGTTTCAAAGCTTCAATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGG 151 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 |||||||| || ||||| | || || || || | || | | || || || || || Sbjct 150 ACAAAGTCACCAGGCTTTAACCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAA 91 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 ||||| ||||| ||||| || ||||||||||||||||| || || || || ||||| || Sbjct 90 CTGGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAA 31 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 |||||||| || | | |||||||| ||| Sbjct 30 GAGAGCTCTCCATTGTTGACGTAAAATTGG 1 >seq96269 Length=446 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | ||||| | || | ||| || | || || || || || ||||| || || Sbjct 237 AGCTGGAGTTTCAAAGCTTCAATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGG 296 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 |||||||| || ||||| | || || || || | || | | || || || || || Sbjct 297 ACAAAGTCACCAGGCTTTAACCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAA 356 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 ||||| ||||| ||||| || ||||||||||||||||| || || || || ||||| || Sbjct 357 CTGGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAA 416 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 |||||||| || | | |||||||| ||| Sbjct 417 GAGAGCTCTCCATTGTTGACGTAAAATTGG 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581642514979200