Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq77635 93.3 3e-14 seq131321 86.0 5e-12 seq127998 86.0 5e-12 >seq77635 Length=207 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 106262 GCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCGA 106321 |||||| |||||||||||||| || || || || || || | || ||||| || Sbjct 207 GCAAATATTTGTTAAAACATTAACGGGAAAAACAATCACTTTAGACGTTGAACCAAATGA 148 Query 106322 TTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACA 106381 | | | | || ||| ||||||| || |||||||| | || || ||||| Sbjct 147 TACCATACAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGAGCAACA 88 Query 106382 AAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACAAC 106439 | | | |||| ||| || ||||||||||||||| || | | ||| | |||||||| Sbjct 87 ACGATTGATTTTTGCAGGAAAACAATTAGAAGATGGTCGTACATTATCTG--ATTACAAC 30 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||||||||| ||| |||||||||| Sbjct 29 ATCCAAAAAGAATCCACATTACATTTAGT 1 >seq131321 Length=300 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| | |||| || || ||||||||||||||| ||| || | ||||| Sbjct 300 CAACAAAGATTGATTTTCGCTGGAAAACAATTAGAAGATGGACGTACTTTGAGTGATTAT 241 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| ||| ||||||||||||| || ||| |||| || Sbjct 240 AATATTCAAAAAGAATCAACATTACATTTAGTATTAAGATTAAGAGGTGG 191 >seq127998 Length=685 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| |||| || || || || ||| | || ||||| Sbjct 660 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAAACTATCACCCTTGAGGTGGAACCATCG 601 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||||| | | | |||||| || ||| || || ||||| | || ||||||| Sbjct 600 GATTCCATCGAAAATGTGAAAACTAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAA 541 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || |||| ||| ||||| ||| | |||||| | ||| | ||||||||| Sbjct 540 CAGCGACTCATTTTTGCAGGCAAGCAACTGGAAGATGGCAGAACACTTTCTGATTACAAC 481 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| |||||||| || || || | || |||||| |||| || || Sbjct 480 ATACAGAAAGAATCCACTCTTCACCTTGTGTTGAGGCTACGTGGCGG 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401088904529024