Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq92029 125 9e-24 seq89999 125 9e-24 seq142104 107 2e-18 seq139941 107 2e-18 seq90861 104 3e-17 seq8698 93.3 5e-14 seq47423 91.5 2e-13 seq248530 89.7 6e-13 seq45252 87.8 2e-12 seq40275 86.0 8e-12 seq48637 82.4 9e-11 >seq92029 Length=736 Score = 125 bits (138), Expect = 9e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 ||||| || || || || |||||||| ||||| || ||| |||||| ||||| | ||| Sbjct 335 TGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCT 276 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | Sbjct 275 CGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCC 216 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || || | ||||||||||||||| Sbjct 215 GCAAATGCCACAAGACGCTCAGCAAAG 189 >seq89999 Length=590 Score = 125 bits (138), Expect = 9e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 ||||| || || || || |||||||| ||||| || ||| |||||| ||||| | ||| Sbjct 71 TGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATCAAACCT 130 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||||||||||||||| ||||| || || || ||| | |||||||||||| | Sbjct 131 CGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCCACTGCC 190 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || || | ||||||||||||||| Sbjct 191 GCAAATGCCACAAGACGCTCAGCAAAG 217 >seq142104 Length=1514 Score = 107 bits (118), Expect = 2e-18 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || |||||||||||||| |||||| ||||| |||||| ||||| Sbjct 657 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 716 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| |||| ||| || | ||||||||| ||| ||| || |||||||||||||| Sbjct 717 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 776 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTT--TGTATCA 130192 || |||||| || || |||| | | |||| || | || | ||| || | Sbjct 777 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATA--AGATGCTCTTTCTGGGTTG 834 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| |||| |||||||| || ||| | || ||| || | |||| || || | Sbjct 835 ATCCAATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTG 894 Query 130253 AAGAGTTCCTTCTTTTC 130269 || |||| || ||||| Sbjct 895 AAAAGTTGCTGTTTTTC 911 >seq139941 Length=1515 Score = 107 bits (118), Expect = 2e-18 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || |||||||||||||| |||||| ||||| |||||| ||||| Sbjct 858 GGCAAAGTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACC 799 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| |||| ||| || | ||||||||| ||| ||| || |||||||||||||| Sbjct 798 TGGCATCTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGAT 739 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTT--TGTATCA 130192 || |||||| || || |||| | | |||| || | || | ||| || | Sbjct 738 TCCTTCCACAGCAGCAAAGGCAACTATCCTCTCACCATA--AGATGCTCTTTCTGGGTTG 681 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| |||| |||||||| || ||| | || ||| || | |||| || || | Sbjct 680 ATCCAATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTG 621 Query 130253 AAGAGTTCCTTCTTTTC 130269 || |||| || ||||| Sbjct 620 AAAAGTTGCTGTTTTTC 604 >seq90861 Length=362 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || |||||||| || | ||||| | || ||||||||||| || ||||||||||| ||| Sbjct 253 TGAAGACCCTCATCTCTTGAGATCAACTCGTTCGAGAAGCAAAGCCCTGGCATGAGGCCC 194 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 | ||||||||||||| | || || |||||||| ||| ||||| | |||||||| Sbjct 193 CTCTTCTTCAACCAGTAGATGGCGCAAAATGATCCACTGAAGAGCACTCCCTCCACCGCG 134 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || || | || || || |||||| Sbjct 133 GCAAAGGCCACGATGCGTTCTGCAAAG 107 >seq8698 Length=528 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/206 (71%), Gaps = 10/206 (5%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||||| || ||||||||||| ||||| || | ||| || |||||| Sbjct 196 TACTCGCCAACCCTTTTTTCGAAGAAGTTGGTCTTGCCCTGCAAAGAAATCAGCTCCATC 255 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA----TTGCTGGCACTCCAATCTGTTTGAGGAG 129843 | || ||||| |||| |||| ||||| |||||| || | | |||| ||| || Sbjct 256 CAGTCGAATGGATTCTCTGAG--CCAAAGATCTTGCTGTGACCCAAGGCTGT--GAGAAG 311 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 |||||| | || |||||||||||| || |||| || ||||||||| ||||||| Sbjct 312 ACGATCAGCCACAAACTCAATGTACTGAGTCATCAGGTCCTTGTTCATACCAATGAGGTC 371 Query 129904 ACATGGGAGCGCGTCCA-AGATGAAC 129928 ||| | || || |||| | |||||| Sbjct 372 ACAGGAAAGGGC-TCCACAAATGAAC 396 >seq47423 Length=281 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || |||||||| | | ||| | ||||| |||||| || ||| Sbjct 59 GCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGAAGGTGAGCCCT 118 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||||||||| | ||||| | ||||||||| | |||||| || || |||||||| Sbjct 119 GGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCGAAAAGAAGATG 178 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 ||||| || || || |||| | | || |||||||| | | || | || | Sbjct 179 CCCTCAACTGCGGCAAAGGCAATAACTCTTTCTCCAAAGGAGGCCGTTTGTGAAGAAATC 238 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 130233 |||| || ||||| | ||||| |||| || ||| || Sbjct 239 CACTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAGGG 276 >seq248530 Length=247 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||||||||| | |||||||||| || | ||| || || |||||| Sbjct 70 TAGATGTTGCTGGTGTATGGCTCAATGGACTCATTGTTGCCAAGGATCTGTGCCGTGGAG 129 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||| |||||||| |||| || | |||||| Sbjct 130 GCTGTTGGCATGGGAGCCAAAAGCAAGCTGTT 161 >seq45252 Length=640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/266 (69%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 |||| || || ||| | || ||||| ||||| || ||||| || | || | ||||| Sbjct 632 TTCCGGTCAATGACCTTGTTCAGATTCTTGGTCACCACCTTAGTCACCTCGTAGAGCTTC 573 Query 118665 TCGTAATCAAAACTGCGA-GTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 118720 | | | ||| | | || ||| |||| ||| | | | || | |||||| || || Sbjct 572 TGGAAGTCATA---GGGACGTC-CTTCGGTGTTGGCGAAGGTCGGTAAGGCGATGGAAGC 517 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 || ||| || || | ||| || | | ||||| || || || |||||||||| || Sbjct 516 CAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGTATTCGATGATCTCCGTGCACAGATT 457 Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT-TGTGTTACACGCATCCTTGT 118839 || | | |||||||||||||||| ||||| ||||| | | || | |||||||| Sbjct 456 GGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGGACTTGCGATTGGCATG-ATCCTTGT 398 Query 118840 AAAGCATGTATGGCGTCCCCGTCTCC 118865 | |||||||| || || ||||||||| Sbjct 397 ACAGCATGTAAGGAGTGCCCGTCTCC 372 >seq40275 Length=336 Score = 86.0 bits (94), Expect = 8e-12 Identities = 211/316 (67%), Gaps = 7/316 (2%) Strand=Plus/Minus Query 117939 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 117998 ||||| ||||||||| || | |||||||| || ||||| || | || |||| |||| Sbjct 313 TGGGACTGATCGATGTAGGGCCCCCGATCTGCTGCCATGTCCAGGACGATCTTCTGCTTG 254 Query 117999 ATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 118058 || ||||| || ||| | ||||| | ||| || || ||||| | ||||| || || Sbjct 253 ATCTCCCAGACCGTCTTATAGAGTTCCTTCATGTCTTCTGGCAAATCCAAC---TTCTGC 197 Query 118059 ATGGATCCACCCGCCTTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAATCT 118116 | |||| || || || | ||| | |||| ||| || || Sbjct 196 ACACTTCCATTGTGGGCGATCAACTGTG-TCCGA-AGCTCCTCATTCCAAAGGCCCTGGG 139 Query 118117 TTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC 118176 |||| |||| || || || ||| || ||||||||| |||| ||| || | Sbjct 138 CAATGAGGTCCTTCAAAAGGTGACGATTCACCTGAACAAACTCTCCCGAGAGCACACGGC 79 Query 118177 TCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTG 118236 || ||||| || |||||| ||||| ||| |||| ||||| |||| ||| || || | Sbjct 78 GCACATAGAGGTTTTGCGTGTAGGGCTCGAAGGACTCGTTGTTCCCCAGGATCTGTGCGG 19 Query 118237 TGGAGGCTGTGGGCAT 118252 |||||||||||||||| Sbjct 18 TGGAGGCTGTGGGCAT 3 >seq48637 Length=361 Score = 82.4 bits (90), Expect = 9e-11 Identities = 203/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 118520 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 118579 |||| |||| || ||||| || || || | || | || || |||| ||| || || Sbjct 50 AAATGCATCGGCCAGACCCTGAACCCCCAAACCCACAGGTCGGTGTCGCATGTTGGAACG 109 Query 118580 CCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || || ||||||| | || | |||| || || ||| | || ||||| ||||| || Sbjct 110 TCGGGCTTCCTCCACGAGGTAGTAGTTCCGGTCAATGACCTTGTTCAGATTCTTGGTCAC 169 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGA-GTCTCTTCA---TTGA 118695 ||||| || | || | ||||| | | | ||| | | || ||| |||| ||| Sbjct 170 CACCTTAGTCACCTCGTAGAGCTTCTGGAAGTCATA---GGGACGTC-CTTCGGTGTTGG 225 Query 118696 CATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGT 118755 | | | || | |||||| || |||| ||| || || | ||| || | | |||| Sbjct 226 CGAAGGTCGGTAAGGCGATGGAAGCCAAATTGCAGACCGCCACCTCGTCGTCGGCGGTGT 285 Query 118756 ACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 118815 | || || || |||||||||| || || | | |||||||||||||||| ||||| | Sbjct 286 ATTCGATGATCTCCGTGCACAGATTGGAGCAGTGGATGGTGCCCAAGTTCTGCTGATTGG 345 Query 118816 ACTT 118819 |||| Sbjct 346 ACTT 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616479182227680