Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq187602 187 3e-42 seq47423 111 2e-19 seq92029 107 2e-18 seq89999 107 2e-18 seq142104 96.9 4e-15 seq139941 91.5 2e-13 seq45252 87.8 2e-12 seq90861 86.0 7e-12 seq40275 82.4 9e-11 >seq187602 Length=2693 Score = 187 bits (206), Expect = 3e-42 Identities = 676/1045 (65%), Gaps = 26/1045 (2%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 || || || || || || ||||||||| | |||||||| || || ||| |||||||||| Sbjct 967 CAGACAGAAACAGGCACTCCATACATGTTATACAAAGATGCTTGCAACAGAAAGAGTAAT 1026 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTA-C 105027 ||| ||||| | || ||||| | |||||| || |||||||| |||| | | | Sbjct 1027 CAACAGAATGTTGGAACCATCAAATGCAGCAATCTTTGCACAGAAATTGTGGAGTACAGC 1086 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 || | | ||||| ||||| ||||| | || ||| | || ||| ||| | ||| Sbjct 1087 AGTCCA-GATGAAGTTGCTGTCTGTAATTTGGCCTCACTTGCACTCAACAAATTTGTTAT 1145 Query 105088 TCCAGAGACAAAGACA------TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 | || || | || ||| ||| |||||||| || || || | || Sbjct 1146 GACTGATGAAAGGCCAGCAAAGTTTAATTTCCAAAAACTCTTTGAGGTCACCCAGGTGGT 1205 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 105201 || ||| |||||| | | ||||||| |||| || || || || ||| | Sbjct 1206 AACACGCAACTTAAACAAAATAATTGATATCAATTACTATCCAGTGAAGGAGGCTGAAAG 1265 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 ||| || | ||||||| | || ||||| | ||||| ||||| | || |||| ||||| Sbjct 1266 ATCGAACAAGAGACACAGACCCATTGGCATTGGTGTACAGGGAATGGCTGATGCCTTCAT 1325 Query 105262 TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGA 105321 |||| | | ||||||| || ||||| || ||| | || |||||||| Sbjct 1326 TCTTATGAGGTATCCATTTGAAAGTGATGAAGCCAAAGAATTGAACAAAAAAATATTTGA 1385 Query 105322 GACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATA 105381 ||| || || | | || || || || |||| || | | | || || Sbjct 1386 GACAATCTACTATGGAGCACTAACAGCATCTTGCCAGTTAGCCAAAGAGAAAGGAGTTTA 1445 Query 105382 TGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGG 105441 |||||| | ||||| ||||| || |||||| ||||| | |||| | |||| || Sbjct 1446 TGAAACTTACGAGGGATCTCCTGCAAGCCAAGGGAAACTTCAGTATGATCTCTGGGGAG- 1504 Query 105442 TGAGACCAAGCT--TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGT 105499 ||| || | || || | ||||||| ||| || |||| | ||| || || | || Sbjct 1505 TGACTCCTA-CTGATCTGTGGGACTGGGCAGCACTGAAGGCAGACATAAAAAAGTATGGA 1563 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559 | | |||||| | | |||| |||||||| ||||| ||||| ||||| || | || Sbjct 1564 TTAAGAAACAGTTTATTGTTGGCACCAATGCCGACAGCTTCCACTGCACAGATTCTCGGC 1623 Query 105560 AATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGA 105619 |||||||||| ||||| || ||||| | ||||| || ||| | || | || Sbjct 1624 AATAATGAATCTTTTGAGCCTTACACAAGCAACATTTACTCAAGACGTGTTCTTTCAGGG 1683 Query 105620 GAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCC 105679 || ||| |||||| || ||||||| || | ||| | | ||||| ||| | ||| Sbjct 1684 GAATTTCAGATTGTAAATCAGCATCTGCTGAAGGACTTGACAGAGAGGGGTTTATGG--- 1740 Query 105680 AAGGATA--TGAAGGATCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 105736 || || | | || | | | ||||| || ||| ||||| || |||||| || Sbjct 1741 AATGACACATTAAAAAACAAACTGGTGGCTGCTAATGGCTCCATACAGCATATTGATGAA 1800 Query 105737 ATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGAT 105793 || || |||| | || ||||| |||||||||||||| | ||| || | Sbjct 1801 ATCCCTGATGATCTCAAACCACTGTACAAGACAGTTTGGGAAATTTCCCAGAGGAC---T 1857 Query 105794 GTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTC 105853 |||| |||||||| || || | || |||||||| ||||| || | | ||| | Sbjct 1858 CTCATAGACATGGCTGCTGACAGAGGAGCATTCATTGACCAAAGCCAGTCTTTCAATGTG 1917 Query 105854 TTCATGGAAAGTCC-AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAA 105912 ||| | | || ||| ||| | ||||| | |||||| | ||| | ||||| || Sbjct 1918 TTCTTTGCTGAACCTAACTATGGC-AAGCTGACAAGCATGCACTTCTACGGCTGGAAAAA 1976 Query 105913 GGGTCTCAAAACGGGGATGTATTAC 105937 ||||||||| || || ||||||||| Sbjct 1977 GGGTCTCAAGACAGGAATGTATTAC 2001 >seq47423 Length=281 Score = 111 bits (122), Expect = 2e-19 Identities = 154/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTG 94804 |||| ||||| || || ||||| || ||||| || | || | || ||||||| | Sbjct 269 TCAAGAAGAAGGCAGACTGGGCCTTGCAGTGGATTTCTTCACAAACGGCCTCCTTTGGAG 210 Query 94805 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CT 94863 | || | | || ||||| |||||||| |||||||| || ||||| || ||| || Sbjct 209 AAAGAGTTATTGCCTTTGCCGCAGTTGAGGGCATCTTCTTTTCGGGTTCATT-TGCATCT 151 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||||||||| |||||||||||||||| ||| ||||||||| ||| | ||| Sbjct 150 ATTTTCTGGCTCAAGAAAAGAGGTCTCATGCCAGGGCTCACCTTCTCCAATGAGTTGATC 91 Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | |||||||| || ||| || ||||| Sbjct 90 AGCAGGGACGAGGGGCTTCACTGTGACTTTGC 59 >seq92029 Length=736 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||||||||| || | ||||||||| || ||||| ||| | ||| || || || Sbjct 189 CTTTGCTGAGCGTCTTGTGGCATTTGCGGCAGTGGAGGGGATCCTATTCAGCGGATCTTT 248 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| || |||| ||| | |||||||||||| | ||||| ||||| ||| ||||| || Sbjct 249 CTGTGCAATTTTCTGGTTGAAGAAGCGAGGTTTGATGCCTGGTCTGACCTTTTCCAATGA 308 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| |||||||| || || || ||||| Sbjct 309 GCTCATCTCTCGCGATGAAGGCCTCCA 335 >seq89999 Length=590 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||||||||| || | ||||||||| || ||||| ||| | ||| || || || Sbjct 217 CTTTGCTGAGCGTCTTGTGGCATTTGCGGCAGTGGAGGGGATCCTATTCAGCGGATCTTT 158 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||| || |||| ||| | |||||||||||| | ||||| ||||| ||| ||||| || Sbjct 157 CTGTGCAATTTTCTGGTTGAAGAAGCGAGGTTTGATGCCTGGTCTGACCTTTTCCAATGA 98 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| |||||||| || || || ||||| Sbjct 97 GCTCATCTCTCGCGATGAAGGCCTCCA 71 >seq142104 Length=1514 Score = 96.9 bits (106), Expect = 4e-15 Identities = 290/438 (66%), Gaps = 20/438 (5%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 94874 || ||||| ||| || || ||||||||||||||||| || ||| || |||| ||||| Sbjct 797 GCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTTCTTT-TGCTGCCATTTTCTGGCT 739 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 || ||| | || ||||||||||| |||||| || ||||| ||| ||||||||| Sbjct 738 AAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGTGACGA 679 Query 94935 GGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAAACCAAC-G 94992 ||| || || || ||||| || | | ||| || ||| | |||||| | | Sbjct 678 GGGTCTTCATTGTGACTTTGC-CTGTATGATGTTCTCATACTTGGTCAACAAACCATCAG 620 Query 94993 ACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTG 95052 | || | || | || || | | || || |||| ||||| ||| |||| | Sbjct 619 AAAAAGTC-ATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAATTCCTTACA 561 Query 95053 GATGCCCTTCCATGCGCTCTCATCGGTATGA-----ATTCTGAAAAAATGTCTGAATATA 95107 || ||||||||| || ||||| |||| | | ||| ||| | || | Sbjct 560 GAAGCCCTTCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAA-----CAGTACA 506 Query 95108 TTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAACTC 95165 |||| | ||| |||| ||| | || | | || ||| || ||| || | Sbjct 505 TTGAATTTGTTGCTGACAGACTTCTG--GTTGCTCTCAACTGCTCAAAGGTTTACAATGC 448 Query 95166 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 95225 || || |||||||||||||||||||||||| | | || || ||||||||||| || || Sbjct 447 TAAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACTTTTTTGA 388 Query 95226 AAAGAGGGTTGGGGACTA 95243 ||||| ||||| || || Sbjct 387 GAAGAGAGTTGGAGAATA 370 >seq139941 Length=1515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 289/438 (66%), Gaps = 20/438 (5%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCT 94874 || ||||| ||| || || |||||||||||||||| ||| ||| || |||| ||||| Sbjct 718 GCCTTTGCTGCTGTGGAAGGAATCTTCTTCTCTGGTT-CTTTTGCTGCCATTTTCTGGCT 776 Query 94875 CAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 94934 || ||| | || ||||||||||| |||||| || ||||| ||| ||||||||| Sbjct 777 AAAAAAGAGGGGCAAGATGCCAGGTCTAACCTTCTCAAATGAGCTCATCAGTCGTGACGA 836 Query 94935 GGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAAACCAAC-G 94992 ||| || || || ||||| || | | ||| | ||| | |||||| | | Sbjct 837 GGGTCTTCATTGTGACTTTGC-CTGTATGATGTTCTCGTACTTGGTCAACAAACCATCAG 895 Query 94993 ACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTG 95052 | || | || | || || | | || || |||| ||||| ||| |||| | Sbjct 896 AAAAAGTC-ATAAAATCGATAATCCAAGATGCTGTTGTCATTGAACAAGAATTCCTTACA 954 Query 95053 GATGCCCTTCCATGCGCTCTCATCGGTATGA-----ATTCTGAAAAAATGTCTGAATATA 95107 || ||||||||| || ||||| |||| | | ||| ||| | || | Sbjct 955 GAAGCCCTTCCAGTTAAGCTTATCGGCATGAACCACACTTTGATGAAA-----CAGTACA 1009 Query 95108 TTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAACTC 95165 |||| | ||| |||| ||| | || | | || ||| || ||| || | Sbjct 1010 TTGAATTTGTTGCTGACAGACTTCTG--GTTGCTCTCAACTGCTCAAAGGTTTACAATGC 1067 Query 95166 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 95225 || || |||||||||||||||||||||||| | | || || ||||||||||| || || Sbjct 1068 TAAAAACCCATTTGACTTCATGGAGAACATTTCCTTGGAGGGCAAGACAAACTTTTTTGA 1127 Query 95226 AAAGAGGGTTGGGGACTA 95243 ||||| ||||| || || Sbjct 1128 GAAGAGAGTTGGAGAATA 1145 >seq45252 Length=640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/166 (73%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 104576 TATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 ||||| |||||| ||| || || |||||| || | |||||||| || || |||||| Sbjct 13 TATGTGGATCAAGGTGGAGGTAAGCGCAAGGGAGCTTTGGCAGTCTACCTGGAACCATGG 72 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 || || ||| | | |||||| | ||| | ||| ||||| || | |||||| ||| Sbjct 73 CATGCCGATGTTTTCGAGTTCTTGGAGCTTCGTAAAAACCATGGCAAGGAGGAGCAGCG- 131 Query 104693 TGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 |||| | |||||||||| | || ||| | || |||||||||||| Sbjct 132 TGCCAGGGATCTCTTCTATGGCCTTTGGGTGCCGGATCTCTTCATG 177 >seq90861 Length=362 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| || || || | || ||||| || ||||| | ||||| ||| || || Sbjct 107 CTTTGCAGAACGCATCGTGGCCTTTGCCGCGGTGGAGGGAGTGCTCTTCAGTGGATCATT 166 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 ||||| || || ||| | |||||| | || ||||||||||| || |||||||| ||||| Sbjct 167 TTGCGCCATCTACTGGTTGAAGAAGAGGGGCCTCATGCCAGGGCTTTGCTTCTCGAACGA 226 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCA 94943 | | ||||| | || ||||| || || Sbjct 227 GTTGATCTCAAGAGATGAGGGTCTTCA 253 >seq40275 Length=336 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 105525 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 105584 ||||||| ||||||||||||||||| ||| |||| || || || | ||| || ||||||| Sbjct 1 CAATGCCCACAGCCTCCACCGCACAGATCCTGGGGAACAACGAGTCCTTCGAGCCCTACA 60 Query 105585 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627 || ||| ||||| || | | ||| ||||||||||||| Sbjct 61 CGCAAAACCTCTATGTGCGCCGTGTGCTCTCGGGAGAGTTTGT 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581416033578720