Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq89999 131 2e-25 seq115025 109 6e-19 seq45252 98.7 1e-15 seq92029 87.8 2e-12 seq90861 84.2 2e-11 seq14287 82.4 8e-11 >seq89999 Length=590 Score = 131 bits (144), Expect = 2e-25 Identities = 299/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 ||||| ||||| | || |||||||| | || |||||||||||||| || || |||||| Sbjct 98 TCATTGGAAAAGGTCAGACCAGGCATCAAACCTCGCTTCTTCAACCAGAAAATTGCACAG 157 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || || || ||||| | ||| || || || |||||| || ||||| || | || || Sbjct 158 AAAGATCCGCTGAATAGGATCCCCTCCACTGCCGCAAATGCCACAAGACGCTCAGC-AAA 216 Query 74910 GGTGCAT---CGGAAGTCATCCA-AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | ||| | ||| ||||||| | || ||||| ||| || ||| || || Sbjct 217 GCTGCTTTCACGG--TTCATCCATTGGATG-GCCCAACTAGCCTTCTCACGGACAGCTGG 273 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTC 75025 | || | || || | ||||||| ||||||| | || ||||||| | | || Sbjct 274 CATCGTGTGAATGGCATCGAAGAGGTCGTCCTTCTCCTTTGGGTCCTTGATGTATTGCTC 333 Query 75026 AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAA 75085 ||||| || ||||| ||||| || || || || || ||| | ||||||| Sbjct 334 AATCAGCAGCGAGTAGGTCTCAGAGTGGATGTTTTCCATGGCAATTTGGAAGCCGTAGAA 393 Query 75086 AGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGT-CGATATTCTCCATGA 75144 | ||| ||||| | |||||| || | || | |||| | ||| | | ||||||| || Sbjct 394 GGCCCGGGCCTCAGGAATCTGCAC-TTCTGAGGAAAACTGCTGTGCCAAGTTCTCCAGGA 452 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 | |||||||| ||||| || ||||| || || || |||| |||||| |||| | Sbjct 453 CTATGCCGTCGGAGGCAGCAAAAAATGCAAGCACATGCTTGACAAAGTGCTGCTCGCTCT 512 Query 75205 CAGTGAGTTTGTCCCAATCCTT 75226 | || || || |||||||||| Sbjct 513 CGGTAAGGTTCACCCAATCCTT 534 >seq115025 Length=885 Score = 109 bits (120), Expect = 6e-19 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 152011 GTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCC 152070 |||| |||||||| ||||||||||| || | || || |||||||| ||||| Sbjct 562 GTCACAGGACTCAGCATTGTGAAGATGTAACGAGGACTAGCAGCATCCTTTCCACCGTGG 621 Query 152071 AGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAA 152130 | || || |||||||| || |||| || ||||||| ||| ||| ||| || || Sbjct 622 ATACGAGTGCCAAACTGGCCTACTGGCTGAAGTAGGTTGACGTTATTGCTGCCGACAAAG 681 Query 152131 TTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTC 152190 ||||| || ||||| | || || ||| |||||| || |||||||| ||||| | | Sbjct 682 TTCTGTGCTAAATTGATGATTGTTCCCATCAGACTTTGCTCGCCGTGGTGGTACGCAGAC 741 Query 152191 TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT--CATGTCCGTCGTCAGGTTCTTCT 152248 | || || | |||| |||| || || || || | | || | |||| || ||| Sbjct 742 AGTTCAGCCACAGATCCTGCCAGTTGAGCAACTTTGACCTCTCTTTTGTCA--TTTCTCT 799 Query 152249 TGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAA 152308 | ||||| | | | || || | ||| ||| || || || ||||||| | ||||| Sbjct 800 TTAGACATGTAAACAGGACTTTCCTTTGGCCTGGCTTTAAGCCATCCACCAGGCAAGGAA 859 Query 152309 TCGAACGCTTGATGTC 152324 |||| |||| | |||| Sbjct 860 TCGATCGCTCGTTGTC 875 Score = 104 bits (114), Expect = 3e-17 Identities = 205/299 (69%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || ||||||||||| ||||| | ||| || || || || Sbjct 580 GTGAAGATGTAACGAGGACTAGCAGCATCCTTTCCACCGTGGATACGAGTGCCAAACTGG 639 Query 117365 CC-ACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || ||| |||| | ||||| | ||| ||| ||| |||||||| || || || |||| Sbjct 640 CCTACT-GGCTGAAGTAGGTTGACGTTATTGCTGCCGACAAAGTTCTGTGCTAAATTGAT 698 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || || || || ||| || ||||| ||||| | | | || ||||| | || Sbjct 699 GATTGTTCCCATCAGACTTTGCTCGCCGTGGTGGTACGCAGACAGTTCAGCCACAGATCC 758 Query 117484 CGCCAGCTGAGCCACCTT--CATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 ||||| ||||| || || | | ||| |||| || |||| || || | | | | Sbjct 759 TGCCAGTTGAGCAACTTTGACCTCTCTTTTGTCA--TTTCTCTTTAGACATGTAAACAGG 816 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 || || | || | |||||| | |||||| ||| | ||| ||||| |||| | |||| Sbjct 817 ACTTTCCTTTGGCCTGGCTTTAAGCCATCCACCAGGCAAGGAATCGATCGCTCGTTGTC 875 >seq45252 Length=640 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 53525 ACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTC 53584 |||||| |||| || | || ||||| || ||||||||||| | || || ||||||| Sbjct 4 ACGGCCAGGTATGTGGATCAAGGTGGAGGTAAGCGCAAGGGAGCTTTGGCAGTCTACCTG 63 Query 53585 GAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAA 53644 || || ||||| ||||| || | ||||| | ||||| ||| || || || | || Sbjct 64 GAACCATGGCATGCCGATGTTTTCGAGTTCTTGGAGCTTCGTAAAAACCATGGCAAGGAG 123 Query 53645 GAGATGCGCTGCC-GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 ||| ||| |||| | || || || || || || ||| | ||||| ||||||||| || Sbjct 124 GAGCAGCG-TGCCAGGGATCTCTTCTATGGC-CTTTGGGTGCCGGATCTCTTCATGGAAC 181 Query 53703 AGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 || || ||||| ||| ||| |||| | ||||| ||||||| Sbjct 182 GTGTCAAGGCGGACGCGGACTGGACCCTGTTTTGCCCCAACGAGT 226 >seq92029 Length=736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 388/603 (64%), Gaps = 20/603 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| ||||| ||||||||||| || | ||| || || ||||||| Sbjct 635 TACTCACCAACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAAGGAAATCAGCTCCATC 576 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAG-GCTTCTCCCCAAA-CTGTGCCATGAGGC 74580 ||||| || || |||| | || | || ||| ||||| |||| || || | Sbjct 575 CAGTCAAAGGGATTCTCGGAGCCAAAGATCTTGCTGTGGCCCAAGGCTGT--CAACAGCC 518 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 |||| || ||||| | ||||||||| ||||| | | ||||||||| | | | Sbjct 517 GATCAGCGACAAACTCAATGTACTGAGTCATCAGGTCTTTGTTCATGCCGATCAAATCAC 458 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGT 74700 | | ||| || | ||||||| | |||||||| || | ||| || | | Sbjct 457 AAGACAGAGCTCCACAAATAAACTTGCGTTCCACCTCAACTGCACCACGGATGATGTCAT 398 Query 74701 G---AATGTCTT-TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAAC 74756 | || |||| ||| | || | | | || ||| ||| ||| || Sbjct 397 GGACAACCTCTTCTGGCA----ACCTATTCTGGAGCATGCCGTACAGCAAGCAGGCGAAG 342 Query 74757 TCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATA 74816 || ||| ||||||||| | || | ||||| ||||| | || |||||||| Sbjct 341 TCGGCATGGAGGCCTTCATCGCGAGAGATGAGCTCATTGGAAAAGGTCAGACCAGGCATC 282 Query 74817 AGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCG 74876 | || |||||||||||||| || || |||||||| || || ||||| | ||| || || Sbjct 281 AAACCTCGCTTCTTCAACCAGAAAATTGCACAGAAAGATCCGCTGAATAGGATCCCCTCC 222 Query 74877 ACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCAT---CGGAAGTCATCCA-AGT 74932 || |||||| || ||||| || | || || | ||| | ||| ||||||| | Sbjct 221 ACTGCCGCAAATGCCACAAGACGCTCAGC-AAAGCTGCTTTCACGG--TTCATCCATTGG 165 Query 74933 CTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCT 74992 || ||||| ||| || ||| || || | || | || || | ||||||| Sbjct 164 ATG-GCCCAACTAGCCTTCTCACGGACAGCTGGCATCGTGTGAATGGCATCGAAGAGGTC 106 Query 74993 TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATG 75052 ||||||| | || ||||||| | | ||||||| || ||||| ||||| || || Sbjct 105 GTCCTTCTCCTTTGGGTCCTTGATGTATTGCTCAATCAGCAGCGAGTAGGTCTCAGAGTG 46 Query 75053 AAT 75055 || Sbjct 45 GAT 43 >seq90861 Length=362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || |||||||| ||||| || ||||| || |||| || ||||| || || | |||| Sbjct 247 CCCTCATCTCTTGAGATCAACTCGTTCGAGAAGCAAAGCCCTGGCATGAGGCCCCTCTTC 188 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||||| || || || |||||||||| | || || || |||||| Sbjct 187 TTCAACCAGTAGATGGCGCAAAATGATCCACTGAAGAGCACTCCCTCCACCGCGGCAAAG 128 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCAT 74916 || || | ||||| || || | ||||| Sbjct 127 GCCACGATGCGTTCTGC-AAAGCTGCAT 101 >seq14287 Length=281 Score = 82.4 bits (90), Expect = 8e-11 Identities = 177/262 (68%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 || |||||||||||| |||||||||| || | | || |||| | || || | Sbjct 16 GAGGGCATCTACGAGGCGCTCAAGGAAAACGCGCTGCTGTCGAAGTTCGCTGGCGGACTG 75 Query 53426 GGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGC--G 53483 || | | |||| | ||||| || ||| ||| | | |||||||| || |||||| | Sbjct 76 GGCAACGACTGGACCAACGTGCGCGCGCTGGGCTCGCACATCAAGGGCACCAACGGCAAG 135 Query 53484 TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 |||| | || | ||||| | || || ||||| |||||||| | ||| |||| Sbjct 136 TCGCAG--GGCGTGGTGCCGTTCCTGAAGGTGGTCAACGACACGGCCGTGGCCGTGAACC 193 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 |||| || ||||||||||| || || | ||||| || |||||||| |||| Sbjct 194 AGGGCGGC---AAGCGCAAGGGCGCGGTCTGCGCGTACCTGGAAACGTGGCACCTGGACA 250 Query 53604 TTATGGAGTTTCTCGAGCTGCG 53625 | ||| || ||||| ||||| Sbjct 251 TCGAGGAATTCCTCGAACTGCG 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545485237874400