Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq96271 149 5e-31 seq96269 149 5e-31 seq43933 138 9e-28 seq6934 107 2e-18 seq44199 98.7 8e-16 >seq96271 Length=453 Score = 149 bits (164), Expect = 5e-31 Identities = 184/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 29883 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 249 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 191 Query 29884 CACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAG 29943 | || || | || || || || |||||||| | |||||||| || || || | || Sbjct 190 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 131 Query 29944 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 30003 ||| ||| || || |||| | | || || || || || ||||| |||||||||||||| Sbjct 130 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 71 Query 30004 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 30063 || || ||||||||||| || || || ||||||||||| ||||||||||| | | | || Sbjct 70 ACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGAC 11 Query 30064 GTAAAACTG 30072 |||||| || Sbjct 10 GTAAAATTG 2 >seq96269 Length=446 Score = 149 bits (164), Expect = 5e-31 Identities = 184/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTG-AGTCTTCAGCGGTTC 29883 |||||| |||| || || || ||| ||||| || | ||||| ||| |||| | ||| Sbjct 198 TTTATCTTCAGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGT-TTCAAAGCTTC 256 Query 29884 CACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAG 29943 | || || | || || || || |||||||| | |||||||| || || || | || Sbjct 257 AATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAA 316 Query 29944 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 30003 ||| ||| || || |||| | | || || || || || ||||| |||||||||||||| Sbjct 317 CCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTAC 376 Query 30004 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 30063 || || ||||||||||| || || || ||||||||||| ||||||||||| | | | || Sbjct 377 ACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGAC 436 Query 30064 GTAAAACTG 30072 |||||| || Sbjct 437 GTAAAATTG 445 >seq43933 Length=829 Score = 138 bits (152), Expect = 9e-28 Identities = 195/273 (71%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30246 |||||||||||| ||| || | |||||| | ||||||| ||||| || || || Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAA 88 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30306 || | ||||||||| ||||| || || |||||||| || || || | || | ||||| Sbjct 89 GTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCC 148 Query 30307 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGA 30366 | |||||||| || || | || |||||||| ||||| ||| | || |||||||| | Sbjct 149 GCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCGGT 208 Query 30367 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 | | |||| ||| || ||| ||| ||||||||||| || |||| || | Sbjct 209 CAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCACG 268 Query 30427 CCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30458 ||| ||||| | ||||||||| || || ||||| Sbjct 269 CCAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 >seq6934 Length=470 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 30239 GCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC 30298 ||||| ||||| | |||||| || || || || || || || |||||||| || ||||| Sbjct 98 GCTCCAAAATGACGCCACTGAAATCCATAAACTGGGCCAAGATCTCCCTCCTCTCTGTGA 157 Query 30299 TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCC 30358 | || || ||||| | ||| |||| ||||| || || ||||||| | | ||| Sbjct 158 TGCAAACCTTGCTTGTTAAGAAAATCTCGTGAACCATTAGCATCCCAGAAATGAATTCCC 217 Query 30359 TTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30418 || ||| | || ||| | || || | || || || ||||||||||||||||| | Sbjct 218 TTATCACTCAACTGTTTTGCATTAGTACAACCACTCACAAACCACAGCAGCTCCTCGGCC 277 Query 30419 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA-CTGT 30463 || | |||||| || | ||| || |||||||| ||||| |||| Sbjct 278 ACTCCGCGCCAAAACACACGCTTTGTTGTGAGGAGAGGAAAGCTGT 323 >seq44199 Length=311 Score = 98.7 bits (108), Expect = 8e-16 Identities = 210/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 29987 GCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAG 30046 |||||||| ||||| || || | ||||| || | ||| | |||||| | | | || || Sbjct 311 GCGATGTTGAAGGGCACGCCCAAGCCCATATCACACGAGCGCTGGTACATCAGGCAGGAC 252 Query 30047 AGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || || |||| | || || ||||| || | ||| ||||| || | ||||||||| Sbjct 251 AGTTCACCGTTGGCAACATAGAACTGGCAGAACATGTGACACGGGGGCAACGCCATGAGG 192 Query 30107 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCT- 30165 ||| || || |||||||| ||| | ||| || | || |||| | ||||| Sbjct 191 TGCAAATCCGCAGGATTCCAGGCTGACAGAAGGATACGACGATCAG-TGGGATCTTCCTT 133 Query 30166 GAT------GAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30219 ||| || | | |||| |||||||||||| ||| || | |||||| | Sbjct 132 GATCTTCCGGATGCACTCGGC------CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGT 79 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 ||||||| ||||| || || || || | ||||||||| ||||| || || ||||| Sbjct 78 GTGCATGTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAG 19 Query 30280 GTCTCCCTCTTC 30291 ||| || || || Sbjct 18 GTCGCCTTCCTC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405057428622576