Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq174639 333 3e-86 seq75038 327 1e-84 seq12672 306 4e-78 seq75039 179 4e-40 seq174641 174 2e-38 seq25321 161 1e-34 seq174640 159 4e-34 seq174642 84.2 3e-11 >seq174639 Length=919 Score = 333 bits (368), Expect = 3e-86 Identities = 517/734 (70%), Gaps = 6/734 (1%) Strand=Plus/Plus Query 176215 GCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCT 176274 || |||||| ||||| | || ||||| || || || | ||||||||||| || || Sbjct 180 GCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCA 239 Query 176275 CTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGA 176334 || || ||||| || ||||| || ||||||| || | ||||| || || || || || Sbjct 240 CTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGG 299 Query 176335 CTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGA 176394 | || ||||| ||| | ||||| || | |||| || || | || ||||| || Sbjct 300 GTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGT 359 Query 176395 CCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAA 176454 |||| ||| | || ||| | || || | | ||| | | || ||||| | || Sbjct 360 ACATATCAATTTGTAGTACTTCATTTTATGCTTGGTGTTGCTTGTTGGATGGGTAGAGAA 419 Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 |||||| | |||| |||| |||| ||| | || ||||| | ||| || | ||| ||||| Sbjct 420 TGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCACCT 479 Query 176515 GTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAG-GATCTTTCTCTGA 176573 || ||||| | ||||| || | || |||||| | ||||||| | |||| || || Sbjct 480 GTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTT-TCCGA 538 Query 176574 TGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCA 176633 ||| |||||| | || || || || || || |||||| |||| ||||||||||| || Sbjct 539 TGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAACA 598 Query 176634 CAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCT 176693 |||||| ||||||| ||||||||||| || |||||||| ||||| ||||| || || | Sbjct 599 TAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCATT 658 Query 176694 TTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAA 176753 || |||||||| || | ||||| ||||||||| || ||| || | | | | Sbjct 659 ATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAACTGCAGGAGA 718 Query 176754 CGAATCA--CAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTA 176811 || | | ||| || || || || || |||||||| || || || | ||| | Sbjct 719 --TATTAGCCTAAATGTTGGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCA 776 Query 176812 GCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGA 176871 || || || ||||| |||||| | || || || || |||||||| ||||||||||| | Sbjct 777 GCAGCCCATGGTTATTTTGGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGT 836 Query 176872 AGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGT 176931 ||||||||||||||||| ||||| | |||||| || | || ||||| || ||| | || Sbjct 837 AGTCTTCACTTCTTCCTAGCAGCTTGGCCAGTTATTGGGATTTGGTTCACAGCACTTGGA 896 Query 176932 GTTTGCACAATGGC 176945 || | |||||||| Sbjct 897 GTAAGTACAATGGC 910 >seq75038 Length=481 Score = 327 bits (362), Expect = 1e-84 Identities = 360/479 (75%), Gaps = 0/479 (0%) Strand=Plus/Minus Query 176473 CTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCA 176532 ||||| ||||| |||||||| ||| || || || | ||||| | || |||| || Sbjct 479 CTAGGAATGCGCCCTTGGATTGCTGTAGCTTATTCAGGTCCAGTTGCAGCTGCGACTGCG 420 Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 || || | | || ||| | ||||||||||| || || ||||| |||||| | || ||| Sbjct 419 GTATTTTTAATTTACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATT 360 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 ||||| || ||||| |||||| |||| |||||||||||||| || ||| ||||||| || Sbjct 359 TCAGGAACTTTCAATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCT 300 Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGA 176712 || |||||| | || ||||| |||||||||||||| || | || || || ||||| || Sbjct 299 TTTCATATGTTAGGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGT 240 Query 176713 AGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGT 176772 | |||||||| ||| | || | || ||||| ||||| |||||| ||| ||| Sbjct 239 TCATTGGTTACTTCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGT 180 Query 176773 TACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGT 176832 || | |||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||| Sbjct 179 TATAGATTCGGACAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGT 120 Query 176833 CGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCA 176892 ||| | || ||||| ||||||||||||||||||||| | | | || |||||| | || Sbjct 119 CGTTTAATTTTCCAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCT 60 Query 176893 GCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 | || || ||| | || ||||| ||| | | || ||| ||||||||||| || Sbjct 59 ATTTGGCCTGTAGTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 1 >seq12672 Length=424 Score = 306 bits (338), Expect = 4e-78 Identities = 312/407 (77%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 176545 TATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTC 176604 || ||| | ||||||||||| || || ||||| |||||| | || |||||||| || ||| Sbjct 18 TACCCAATTGGTCAAGGATCATTTTCGGATGGAATGCCTTTAGGAATTTCAGGAACTTTC 77 Query 176605 AACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTT 176664 || |||||| |||| |||||||||||||| || ||| ||||||| || || |||||| | Sbjct 78 AATTTTATGATTGTTTTCCAAGCAGAGCATAATATTTTAATGCATCCTTTTCATATGTTA 137 Query 176665 GGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACT 176724 || ||||| |||||||||||||| || | || || || ||||| || | |||||| Sbjct 138 GGTGTAGCTGGTGTGTTTGGTGGTTCATTATTTTCTGCTATGCATGGTTCATTGGTTACT 197 Query 176725 TCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGA 176784 || ||| | || | || ||||| ||||| |||||| ||| ||||| | ||||||| Sbjct 198 TCATCATTAATTCGTGAAACAACTGAAAATGAATCAACAAATGCTGGTTATAGATTCGGA 257 Query 176785 CAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTC 176844 ||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||| | || ||| Sbjct 258 CAAGAAGAAGAAACATATAACATTGTAGCAGCACATGGTTATTTTGGTCGTTTAATTTTC 317 Query 176845 CAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTT 176904 || ||||||||||||||||||||| | | | || |||||| | || | || || Sbjct 318 CAATATGCTTCTTTCAATAACTCACGCTCTTTACATTTCTTCTTAGCTATTTGGCCTGTA 377 Query 176905 GTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAA 176951 ||| | || ||||| ||| | | || ||| ||||||||||| || Sbjct 378 GTTGGAATTTGGTTCACTTCTTTAGGAATTTCAACAATGGCATTTAA 424 >seq75039 Length=421 Score = 179 bits (198), Expect = 4e-40 Identities = 272/382 (71%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| | ||| | || | |||| | ||| || | || ||||||||||||| || | Sbjct 381 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 322 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 ||||||||| | | | || ||| | | ||| ||||| |||| ||| |||| ||||| Sbjct 321 ATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGTTGCTGCACC 263 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || ||||| || || ||||| ||||| || | || || || | ||||||||||| Sbjct 262 TCCAGTAGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 203 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 || || |||| || | | || | ||||||||||| || |||| || || ||||| Sbjct 202 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 143 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | | || |||||||| || ||||| ||||| || ||| | |||| Sbjct 142 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 83 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAAC-TTAGTTACA 176470 | |||||| | | || || | || |||||||| ||||||||| || ||| | Sbjct 82 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACTTTCGTTTC- 24 Query 176471 GACTAGGCATGCGTCCTTGGAT 176492 | ||||| ||||| |||||||| Sbjct 23 GTCTAGGAATGCGCCCTTGGAT 2 >seq174641 Length=312 Score = 174 bits (192), Expect = 2e-38 Identities = 216/293 (74%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 176453 AATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 176512 |||||||| | |||| |||| |||| ||| | || ||||| | ||| || | ||| |||| Sbjct 303 AATGGGAATTCAGTTTCAGATTAGGTATGAGACCATGGATATTTGTAGCTTTCTCAGCAC 244 Query 176513 CAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGG-ATCTTTCTCT 176571 | || ||||| | ||||| || | || |||||| | ||||||| | |||| || Sbjct 243 CTGTTGTAGCAGCTTTTGCAGTATTTGTTGTTTATCCAATTGGTCAAGCTAGCTTT-TCC 185 Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 ||||| |||||| | || || || || || || |||||| |||| ||||||||||| Sbjct 184 GATGGAATGCCTTTAGGAATAAGTGGAACTTTTAATTTTATGCTTGTGTTCCAAGCAGAA 125 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCT 176691 || |||||| ||||||| ||||||||||| || |||||||| ||||| ||||| || || Sbjct 124 CATAACATTTTAATGCATCCATTCCATATCCTAGGAGTAGCTGGTGTATTTGGAGGTTCA 65 Query 176692 CTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGAC 176744 | || |||||||| || | ||||| ||||||||| || ||| || Sbjct 64 TTATTTAGTGCAATGCATGGTTCATTAGTTACATCTTCACTTCTTGCAGAAAC 12 >seq25321 Length=478 Score = 161 bits (178), Expect = 1e-34 Identities = 248/351 (71%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| | ||| | || | |||| | ||| || | || ||||||||||||| || | Sbjct 129 TTTTGTGAATGGATTACTAGTACAGATAACCGATTATATATTGGTTGGTTTGGAGTTTGC 188 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 ||||||||| | | | || ||| | | ||| ||||| |||| ||| |||| ||||| Sbjct 189 ATGATTCCAACTTTATTAACAGCTACCTC-TGTATTTATTATTGCTTTTGTTGCTGCACC 247 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || ||||| || || ||||| ||||| || | || || || | ||||||||||| Sbjct 248 TCCAGTTGATATTGATGGAATTCGTGAACCTGTTTCTGGTTCATTATTATATGGAAACAA 307 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 || || |||| || | | || | ||||||||||| || |||| || || ||||| Sbjct 308 TATTATTACAGGGGCTATTATTCCTACTTCAAACGCAATTGGTTTACATTTTTATCCAAT 367 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | | || |||||||| || ||||| ||||| || ||| | |||| Sbjct 368 TTGGGAAGCTGCTTCTTTAGATGAATGGCTATATAATGGTGGACCTTATCAATTAATTGT 427 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACT 176462 | |||||| | | || || | || |||||||| |||||||||| Sbjct 428 TTGCCACTTTTTCTTAGGAATTTGTTGCTATATGGGACGTGAATGGGAACT 478 >seq174640 Length=289 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 || || || || || |||||||| || || || | ||| ||| || || ||||| ||| Sbjct 255 GGATATAAGTTTGGTCAAGAAGATGAAACTTATAGCATATCAGCAGCCCATGGTTATTTT 196 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTT 176889 ||| | || || || || |||||||| ||||||||||| | ||||||||||||||||| Sbjct 195 GGTAGACTCATATTTCAATATGCTTCCTTCAATAACTCTCGTAGTCTTCACTTCTTCCTA 136 Query 176890 GCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTC 176949 ||||| | |||||| || | || ||||| || ||| | || || | |||||||| ||| Sbjct 135 GCAGCTTGGCCAGTTATTGGTATTTGGTTCACAGCACTTGGAGTAAGTACAATGGCTTTC 76 Query 176950 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGA 176987 ||| | || ||||| ||||||||||| || || |||| Sbjct 75 AACTTAAATGGTTTAAACTTCAACCAATCCATCCTAGA 38 >seq174642 Length=303 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 176215 GCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCT 176274 || |||||| ||||| | || ||||| || || || | ||||||||||| || || Sbjct 229 GCTTTTATTCTTGCACCTGCAGTAGATATTGATGGAATAAGAGAACCAGTAGCTGGCTCA 170 Query 176275 CTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGA 176334 || || ||||| || ||||| || ||||||| || | ||||| || || || || || Sbjct 169 CTTCTTTATGGCAATAACATTATAACAGGAGCTGTAATACCAAGTTCTAATGCTATTGGG 110 Query 176335 CTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGA 176394 | || ||||| ||| | ||||| || | |||| || || | || ||||| || Sbjct 109 GTTCATTTCTATCCAGTTTGGGAGTCAAATGGATTTGATGAGTGCTTATATAATGGTGGT 50 Query 176395 CCATACCAACTCGTTGTATTCCACTT 176420 |||| ||| | || ||| | || || Sbjct 49 ACATATCAATTTGTAGTACTTCATTT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601585637736960