Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq44199 138 1e-27 seq43933 132 4e-26 seq96271 123 2e-23 seq96269 123 2e-23 >seq44199 Length=311 Score = 138 bits (152), Expect = 1e-27 Identities = 218/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 ||| ||||| |||||| ||||||| |||||||| ||||||||| | |||||||||||| | Sbjct 3 TCGCGAGGAAGGCGACCTGGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTTGGGGCGAA 62 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG-A 34502 ||| | || | | | ||||| | |||||||| | ||| |||||| | ||| | Sbjct 63 GTACCAGGACATGCACACTGACTACACTGGACAGGGCGTGGATCAGCTGGCCGA-GTGCA 121 Query 34503 TCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGA 34562 || | | ||| | || ||| | | ||| | ||| || ||||| || Sbjct 122 TCCGGAAGATCAAGGAAGATCCCACTGATCGTCGTATCCTTCTGTCAGCCTGGAATCCTG 181 Query 34563 AGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGA 34622 |||| | | || |||||| | |||||||| |||| ||||||| ||||| || || | Sbjct 182 CGGATTTGCACCTCATGGCGTTGCCCCCGTGTCACATGTTCTGCCAGTTCTATGTTGCCA 241 Query 34623 ATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGT 34682 | || || |||||||||| | | || || || ||| | || ||||| || || ||||| | Sbjct 242 ACGGTGAACTGTCCTGCCTGATGTACCAGCGCTCGTGTGATATGGGCTTGGGCGTGCCCT 301 Query 34683 TCAACATTGC 34692 ||||||| || Sbjct 302 TCAACATCGC 311 Score = 138 bits (152), Expect = 1e-27 Identities = 218/310 (70%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 6653 GCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGAC 6712 || |||||||| ||||| || || ||||| || | ||| || || || | | |||||||| Sbjct 311 GCGATGTTGAAGGGCACGCCCAAGCCCATATCACACGAGCGCTGGTACATCAGGCAGGAC 252 Query 6713 AGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGA 6772 || || || || || || ||||| ||||||| |||| |||||||| | |||||| || Sbjct 251 AGTTCACCGTTGGCAACATAGAACTGGCAGAACATGTGACACGGGGGCAACGCCATGAGG 192 Query 6773 GGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTC 6832 | | |||| || ||||| || ||| | ||| | | ||| || | ||| Sbjct 191 TGCAAATCCGCAGGATTCCAGGCTGACAGAAGGATACGACGATCAGTGGGATCTTCCTTG 132 Query 6833 AAGGTGTCGAT-CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCT 6891 | | ||| ||| | |||||| ||| | |||||||| | ||||| | | | Sbjct 131 ATCTTCCGGATGCAC-TCGGCCAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCAT 73 Query 6892 CCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 || | |||| |||||||||||| | ||||||||| |||||||| ||||||| |||||| Sbjct 72 GTCCTGGTACTTCGCCCCAAAGTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCC 13 Query 6952 CTCCTCCCGA 6961 ||||| ||| Sbjct 12 TTCCTCGCGA 3 >seq43933 Length=829 Score = 132 bits (146), Expect = 4e-26 Identities = 193/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAA 6912 |||||| ||| | |||||||| | ||||| | | | || | |||| ||||||||| Sbjct 29 CAGCTGATCCACGCCCTGTCCAGTGTAGTCAGTGTGCATGTCCTGGTACTTCGCCCCAAA 88 Query 6913 GTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCC 6972 ||| | ||||||||| |||||||| ||||||| |||||| ||||| ||| | || || Sbjct 89 GTGGCGCCACTGGAAGCCGTAGACAGGGCCCAGGTCGCCTTCCTCGCGATGTCCCAAGCC 148 Query 6973 CCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGA 7032 ||||||||||| || || ||||| |||| || ||||| ||| | || ||| | Sbjct 149 GCGCTTGTCCAGGAACTCGCGAGAGCCGTTGGCTTCCCAAATCCTAACACCCTTCTCGGT 208 Query 7033 GAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTT 7092 | | |||| ||| || | || | | ||||||||||| || || | ||| || Sbjct 209 CAAATGGTTGGCGTTGGTATCACCTTTGATGAACCACAGCAATTCTTCCAGCACCCCACG 268 Query 7093 CCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 |||| | || || || |||||||| || || || Sbjct 269 CCAGAAGACGCGCTTGGTCGTCAGTAGTGGGAA 301 Score = 132 bits (146), Expect = 4e-26 Identities = 193/273 (71%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || || |||||||| || || || | |||| || ||| | || || |||||||| Sbjct 301 TTCCCACTACTGACGACCAAGCGCGTCTTCTGGCGTGGGGTGCTGGAAGAATTGCTGTGG 242 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | | || | || ||| |||| | | | ||| || | ||| ||||| Sbjct 241 TTCATCAAAGGTGATACCAACGCCAACCATTTGACCGAGAAGGGTGTTAGGATTTGGGAA 182 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 || |||| ||||| || || ||||||||||| || || | ||| ||||| |||||| Sbjct 181 GCCAACGGCTCTCGCGAGTTCCTGGACAAGCGCGGCTTGGGACATCGCGAGGAAGGCGAC 122 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 ||||||| |||||||| ||||||||| | |||||||||||| |||| | || | | Sbjct 121 CTGGGCCCTGTCTACGGCTTCCAGTGGCGCCACTTTGGGGCGAAGTACCAGGACATGCAC 62 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 | ||||| | |||||||| | ||| |||||| Sbjct 61 ACTGACTACACTGGACAGGGCGTGGATCAGCTG 29 >seq96271 Length=453 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665 |||||| |||||| ||||| ||||| || || |||||||||||| |||| || ||||| Sbjct 1 CCAATTTTACGTCAACAATGGAGAGCTCTCTTGTCAGCTCTATCAAAGATCCGGGGACAT 60 Query 34666 GGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| | || || || || |||||||| ||||| | || || || | | |||| || || Sbjct 61 GGGCCTGGGTGTACCCTTTAACATTGCCAGTTATTCCCTTCTGACATTCCTGATAGCACA 120 Query 34726 TGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCT 34785 |||| ||||| ||||| || | || ||||| |||| ||||| ||| | || | Sbjct 121 TGTCTGTGGGTTAAAGCCTGGTGACTTTGTCCATACACTGGGAGATGCACATGTTTATTT 180 Query 34786 GAACCACATCGAGCGGCTCCGGA--TCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || ||||| || ||| | | ||||||| ||| ||||||| ||| ||||| Sbjct 181 AAATCACATTGA--AGCTTTGAAACTCCAGCTTCAAAGAGAGCCATTACCATTCCC 234 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGA--TCCGGAGCCGCTCGATGTGGTTCAGGT 6563 ||||| ||| ||||||| ||| ||||||| | | ||| || ||||| || | | Sbjct 234 GGGAATGGTAATGGCTCTCTTTGAAGCTGGAGTTTCAAAGCT--TCAATGTGATTTAAAT 177 Query 6564 AGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | | ||| ||||| |||| ||||| || | || ||||| ||||| |||||| | Sbjct 176 AAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACATGTG 117 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | |||| | | || || || | ||||| |||||||| || || || || | ||||||| Sbjct 116 CTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGCCCATGT 57 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 | || |||| |||||||||||| || || ||||| ||||| |||||| |||||| Sbjct 56 CCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGACGTAAAATTGG 1 >seq96269 Length=446 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGA--TCCGGAGCCGCTCGATGTGGTTCAGGT 6563 ||||| ||| ||||||| ||| ||||||| | | ||| || ||||| || | | Sbjct 213 GGGAATGGTAATGGCTCTCTTTGAAGCTGGAGTTTCAAAGCT--TCAATGTGATTTAAAT 270 Query 6564 AGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | | ||| ||||| |||| ||||| || | || ||||| ||||| |||||| | Sbjct 271 AAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACATGTG 330 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | |||| | | || || || | ||||| |||||||| || || || || | ||||||| Sbjct 331 CTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGCCCATGT 390 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 | || |||| |||||||||||| || || ||||| ||||| |||||| |||||| Sbjct 391 CCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATTGTTGACGTAAAATTGG 446 Score = 123 bits (136), Expect = 2e-23 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665 |||||| |||||| ||||| ||||| || || |||||||||||| |||| || ||||| Sbjct 446 CCAATTTTACGTCAACAATGGAGAGCTCTCTTGTCAGCTCTATCAAAGATCCGGGGACAT 387 Query 34666 GGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| | || || || || |||||||| ||||| | || || || | | |||| || || Sbjct 386 GGGCCTGGGTGTACCCTTTAACATTGCCAGTTATTCCCTTCTGACATTCCTGATAGCACA 327 Query 34726 TGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCT 34785 |||| ||||| ||||| || | || ||||| |||| ||||| ||| | || | Sbjct 326 TGTCTGTGGGTTAAAGCCTGGTGACTTTGTCCATACACTGGGAGATGCACATGTTTATTT 267 Query 34786 GAACCACATCGAGCGGCTCCGGA--TCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || ||||| || ||| | | ||||||| ||| ||||||| ||| ||||| Sbjct 266 AAATCACATTGA--AGCTTTGAAACTCCAGCTTCAAAGAGAGCCATTACCATTCCC 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446844613268160