Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq96271 109 5e-19 seq96269 109 5e-19 >seq96271 Length=453 Score = 109 bits (120), Expect = 5e-19 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 118426 AGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTC 118485 || || || || || | ||||| ||| || |||||||||| | ||||||||||| Sbjct 240 AGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGTTTCAAAGCTTCAATGTGATTT 181 Query 118486 ATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGG-TGTAAGCC-CTGTCA 118543 | ||| ||||| ||||| || | |||||| | || |||||||| | ||| || | | || Sbjct 180 AAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACA 121 Query 118544 GGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGAC 118603 ||| | |||| | |||||| | || ||||| | ||||| || |||||||| | Sbjct 120 TGTG--CTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGC 63 Query 118604 CCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTT 118649 ||||||| | ||||| || || | || ||||||||||| || || Sbjct 62 CCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATT 17 >seq96269 Length=446 Score = 109 bits (120), Expect = 5e-19 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 118426 AGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTC 118485 || || || || || | ||||| ||| || |||||||||| | ||||||||||| Sbjct 207 AGGGTTGGGAATGGTAATGGCTCTCTTTGAAGCTGGAGTTTCAAAGCTTCAATGTGATTT 266 Query 118486 ATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGG-TGTAAGCC-CTGTCA 118543 | ||| ||||| ||||| || | |||||| | || |||||||| | ||| || | | || Sbjct 267 AAATAAACATGTGCATCTCCCAGTGTATGGACAAAGTCACCAGGCTTTAACCCACAGACA 326 Query 118544 GGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGAC 118603 || || |||| | |||||| | || ||||| | ||||| || |||||||| | Sbjct 327 --TGTGCTATCAGGAATGTCAGAAGGGAATAACTGGCAATGTTAAAGGGTACACCCAGGC 384 Query 118604 CCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTT 118649 ||||||| | ||||| || || | || ||||||||||| || || Sbjct 385 CCATGTCCCCGGATCTTTGATAGAGCTGACAAGAGAGCTCTCCATT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413198645251792