Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq149514 95.1 1e-14 seq119672 95.1 1e-14 seq113036 95.1 1e-14 seq119665 93.3 4e-14 seq119663 93.3 4e-14 seq130988 91.5 1e-13 seq113037 91.5 1e-13 seq113044 84.2 2e-11 seq149518 82.4 7e-11 seq149517 82.4 7e-11 seq71856 82.4 7e-11 seq71855 82.4 7e-11 >seq149514 Length=710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | ||| | ||| | ||| || ||| ||| || || || |||||||| | Sbjct 279 CCTCCTCTCAGGCGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATGTTATAATCACTA 220 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||||| | || ||||||||||| || ||||| || | | |||||||| | || Sbjct 219 AGAGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAAATCAATCTTTGCTGGTCAGGTGGA 160 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | || ||||| ||| || ||||| || | | | || || | || || Sbjct 159 ATTCCTTCCTTGTCTTGGATCTTTGTTTTGACATTCTCAATAGAGTCACTAGGTTCAACC 100 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| |||||||| ||||| || ||||| ||||| Sbjct 99 TCAAGGGTGATGGTTTTCCCCGTCAGAGTTTTCACGAAGATCTGCAT 53 >seq119672 Length=247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 39068 AGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||| ||| ||||||||| || || ||| ||||| || || |||||| ||||| ||| Sbjct 213 AGCCTAAGCACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAATCGCTGAGTGTGCGT 154 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 |||| || || ||||| || ||||| ||||| ||||||||||||| ||| | | ||| Sbjct 153 CCGTCCTCTAGTTGTTTTCCTGCAAAGATAAGTCGCTGCTGGTCGGGGGGGATACCCTCC 94 Query 39187 TTGTCCATGATTTT 39200 |||||| ||| || Sbjct 93 TTGTCCTGGATCTT 80 >seq113036 Length=461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || || ||| || || || || || ||| || ||||| | Sbjct 188 GCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCC 247 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 || || ||||| || || ||||| || ||||| |||||||| |||||| | | ||| | Sbjct 248 ATCTTCCAGCTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGTGGG-ATACCCTCCT 306 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTG 39246 ||||| || || || | ||| | || | | || || | |||||| |||| || Sbjct 307 TGTCCTGTATCTTGGTCTTCA-CGTTGTCAATGGTGTCACTTGGCTCCACTTCCAAGGTT 365 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||||||||||| || |||||||||||||| Sbjct 366 ATGGTCTTTCCCGTCAGCGTCTTGACAAAGATTTGCAT 403 >seq119665 Length=456 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAA 39151 |||||| || || || || |||| |||| || || |||| ||||||||||||||||||| Sbjct 456 CTCTTTCTGGATGTTGTAGTCGGACAAG-GTCCGGCCGTCCTCAAGCTGTTTGCCCGCAA 398 Query 39152 ATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 | || || ||||| ||||| | || | || || |||||| || || || | Sbjct 397 AGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACAT 338 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | |||||| | ||| || |||| ||| || |||| || |||| ||| || | Sbjct 337 TCTCGATGGTATCGGAGGGCTCGACATCCAACGTAATGGTTTTCCCGGTCAACGTCTTGA 278 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 277 CAAAGATCTGCAT 265 >seq119663 Length=482 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAA 39151 |||||| || || || || |||| |||| || || |||| ||||||||||||||||||| Sbjct 482 CTCTTTCTGGATGTTGTAGTCGGACAAG-GTCCGGCCGTCCTCAAGCTGTTTGCCCGCAA 424 Query 39152 ATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 | || || ||||| ||||| | || | || || |||||| || || || | Sbjct 423 AGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACAT 364 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | |||||| | ||| || |||| ||| || |||| || |||| ||| || | Sbjct 363 TCTCGATGGTATCGGAGGGCTCGACATCCAACGTAATGGTTTTCCCGGTCAACGTCTTGA 304 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 303 CAAAGATCTGCAT 291 >seq130988 Length=550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || || ||| || || || || || ||| || ||||| | Sbjct 315 GCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCC 256 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || |||||||||||||| | || | | ||||| Sbjct 255 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGAGGGATACCTTCTTT 196 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || ||||| | ||||| || | |||| Sbjct 195 GTCCTGGATCTT-GGTCTTCACGTTGTCGATAGTGTCGCTTGGTTCCACCTCAAGAGTGA 137 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| ||||| || || || || |||||||| Sbjct 136 TGGTTTTTCCGGTCAGAGTCTTCACGAAAATTTGCAT 100 >seq113037 Length=419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || || ||| || || || || || ||| || ||||| | Sbjct 188 GCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTTCGGCC 247 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 || || ||||| || || ||||| || ||||| |||||||| |||||| | | ||| | Sbjct 248 ATCTTCCAGCTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGTGGG-ATACCCTCCT 306 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTCCACGTCCACCGTG 39246 ||||| || || || | ||| | || | | || || | |||||| |||| || Sbjct 307 TGTCCTGTATCTTGGTCTTCA-CGTTGTCAATGGTGTCACTTGGCTCCACTTCCAAGGTT 365 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||||||||||| || |||||||| ||||| Sbjct 366 ATGGTCTTTCCCGTCAGCGTCTTGACAAAGATCTGCAT 403 >seq113044 Length=228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 125/171 (73%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTG 39174 |||| ||||| | || || ||||| || || ||||| || ||||| |||||||| |||| Sbjct 3 CAAG-GTTCGGCCATCTTCCAGCTGCTTTCCGGCAAAAATGAGACGTTGCTGGTCCGGTG 61 Query 39175 GGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACTC 39233 || | | ||| |||||| || || || | ||| | || | | || || | ||| Sbjct 62 GG-ATACCCTCCTTGTCCTGTATCTTGGTCTTCA-CGTTGTCAATGGTGTCACTTGGCTC 119 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || || | |||||||||||||| || |||||||||||||| Sbjct 120 CACTTCCAAGGTTATGGTCTTTCCCGTCAGCGTCTTGACAAAGATTTGCAT 170 >seq149518 Length=270 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| ||| || || || |||||||| ||| |||||| | || || Sbjct 262 CACAAGATGAAGGGTGGACTCCTTCTGGATGTTATAATCACTAAGAGTTCGTCCATCTTC 203 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||| || ||||| || | | |||||||| | || | | || ||||| Sbjct 202 AAGCTGTTTACCAGCAAAAATCAATCTTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTG 143 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | | || || | || || || | ||||| |||| Sbjct 142 GATCTTTGTTTTGACATTCTCAATAGAGTCACTAGGTTCAACCTCAAGGGTGATGGTTTT 83 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| ||||| || ||||| ||||| Sbjct 82 CCCCGTCAGAGTTTTCACGAAGATCTGCAT 53 >seq149517 Length=289 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || ||| ||| || || || |||||||| ||| |||||| | || || Sbjct 262 CACAAGATGAAGGGTGGACTCCTTCTGGATGTTATAATCACTAAGAGTTCGTCCATCTTC 203 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||| || ||||| || | | |||||||| | || | | || ||||| Sbjct 202 AAGCTGTTTACCAGCAAAAATCAATCTTTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTG 143 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | | || || | || || || | ||||| |||| Sbjct 142 GATCTTTGTTTTGACATTCTCAATAGAGTCACTAGGTTCAACCTCAAGGGTGATGGTTTT 83 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| ||||| || ||||| ||||| Sbjct 82 CCCCGTCAGAGTTTTCACGAAGATCTGCAT 53 >seq71856 Length=271 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | || |||||||| ||||| ||| || |||||||||||||| | Sbjct 110 CCTCCTCTTAATCTCAATACCAAATGCAGCGTCGACTCCTTCTGTATATTATAATCAGAC 169 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | | || || || || || || ||||| || ||||| || ||||| | ||| Sbjct 170 AGGGTCCTTCCATCCTCTAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGGGGG 229 Query 39178 ACGCTCTCTTTGTCC 39192 | | || |||||| Sbjct 230 ATACCTTCCTTGTCC 244 >seq71855 Length=408 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | || |||||||| ||||| ||| || |||||||||||||| | Sbjct 247 CCTCCTCTTAATCTCAATACCAAATGCAGCGTCGACTCCTTCTGTATATTATAATCAGAC 306 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | | | || || || || || || ||||| || ||||| || ||||| | ||| Sbjct 307 AGGGTCCTTCCATCCTCTAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGGGGG 366 Query 39178 ACGCTCTCTTTGTCC 39192 | | || |||||| Sbjct 367 ATACCTTCCTTGTCC 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428220976406564